RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 ZNF630Q2M218 657 aaPredicted RBP6.95□□□□□ -1.3
UPF2-203ENST00000397053 CHRFAM7AQ494W8 412 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 RUNDC3AQ59EK9 446 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 ZNF805Q5CZA5 627 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 KDELC1Q6UW63 502 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 PLEKHG7Q6ZR37 379 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 NRROSQ86YC3 692 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 GALNT12Q8IXK2 581 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 CSNK1A1LQ8N752 337 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 ZNF610Q8N9Z0 462 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 DNAJA3Q96EY1 480 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 SLC25A44Q96H78 314 aaPredicted RBP6.95□□□□□ -1.3
UPF2-203ENST00000397053 TREM1Q9NP99 234 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 EIF2B3Q9NR50 452 aaKnown RBP6.95□□□□□ -1.3
UPF2-203ENST00000397053 NLGN3Q9NZ94 848 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 FNIP2Q9P278 1114 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 PCDHGA10Q9Y5H3 936 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 ANKRD12Q6UB98 2062 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 MDFIC2A0A1B0GVS7 189 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 DISC1C4P0D8 188 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 LEFTY1O75610 366 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 PSKH1P11801 424 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 MAGEA3P43357 314 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 HERVK_113P63132 956 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 ARHGAP1Q07960 439 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 FAM76BQ5HYJ3 339 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 SWT1Q5T5J6 900 aaKnown RBP6.94□□□□□ -1.3
UPF2-203ENST00000397053 LRFN4Q6PJG9 635 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.94□□□□□ -1.3
UPF2-203ENST00000397053 PXYLP1Q8TE99 480 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 FAM3CQ92520 227 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 C12orf42Q96LP6 360 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 HSPA12BQ96MM6 686 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 SFXN2Q96NB2 322 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 ERVK-6Q9BXR3 956 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 S100A14Q9HCY8 104 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 IL23AQ9NPF7 189 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 XPNPEP1Q9NQW7 623 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 TAS2R10Q9NYW0 307 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 DNAJB11Q9UBS4 358 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 SCML2Q9UQR0 700 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 PCDHGB6Q9Y5F9 930 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 DCCP43146 1447 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 FXYD6-FXYD2A0A087WZ82 144 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 A0A0G2JPF8 293 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 LOC730098B7Z3J9 87 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 HNRNPCL3B7ZW38 293 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 J3KR12 359 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 FBP2O00757 339 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 CAPN5O15484 640 aaPredicted RBP6.94□□□□□ -1.3
UPF2-203ENST00000397053 TLX2O43763 284 aaPredicted RBP6.94□□□□□ -1.3
UPF2-203ENST00000397053 SEMA4FO95754 770 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 THEGLP0DJG4 465 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 HNRNPCL4P0DMR1 293 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 ETS2P15036 469 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 GDF5P43026 501 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 RGS19P49795 217 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 AFF1P51825 1210 aaKnown RBP6.94□□□□□ -1.3
UPF2-203ENST00000397053 AKR1C2P52895 323 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 E2F1Q01094 437 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 TGFBR3Q03167 851 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 RUNX3Q13761 415 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 EGFLAMQ63HQ2 1017 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 ENPP6Q6UWR7 440 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 CCDC116Q8IYX3 515 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 LRIG1Q96JA1 1093 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 PITX2Q99697 317 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 ZNF350Q9GZX5 532 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 FXYD6Q9H0Q3 95 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 HIPK2Q9H2X6 1198 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 BCAS3Q9H6U6 928 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 PLEKHA3Q9HB20 300 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 COL20A1Q9P218 1284 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 REV1Q9UBZ9 1251 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 TMX2-CTNND1H3BSU7 103 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 TNFSF4P23510 183 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 DGKQP52824 942 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 EPHA4P54764 986 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 SLC18A2Q05940 514 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 GNMTQ14749 295 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 TRAM2Q15035 370 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 ECM1Q16610 540 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 ASTE1Q2TB18 679 aaPredicted RBP6.94□□□□□ -1.3
UPF2-203ENST00000397053 SIRPB2Q5JXA9 342 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 TMEM69Q5SWH9 247 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 CATSPEREQ5SY80 951 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 ANKRD22Q5VYY1 191 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 OGFOD2Q6N063 350 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 SLC36A4Q6YBV0 504 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 MRPL41Q8IXM3 137 aaKnown RBP6.94□□□□□ -1.3
UPF2-203ENST00000397053 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP6.94□□□□□ -1.35e-6■■■■■ 81.8
UPF2-203ENST00000397053 FAM156AQ8NDB6 213 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 NFKBIDQ8NI38 313 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 SNIP1Q8TAD8 396 aaKnown RBP6.94□□□□□ -1.3
UPF2-203ENST00000397053 STOML3Q8TAV4 291 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.94□□□□□ -1.31e-10■■■■■ 30.6
UPF2-203ENST00000397053 ELP5Q8TE02 316 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 SCAMP4Q969E2 229 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 RRNAD1Q96FB5 475 aaKnown RBP6.94□□□□□ -1.3
UPF2-203ENST00000397053 S100A16Q96FQ6 103 aaKnown RBP6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms