RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 ZIM3Q96PE6 472 aa20.46■□□□□ 0.87
CLN3-207ENST00000395653 SMC6Q96SB8 1091 aa20.46■□□□□ 0.87
CLN3-207ENST00000395653 SLC25A23Q9BV35 468 aa20.46■□□□□ 0.87
CLN3-207ENST00000395653 C12orf65Q9H3J6 166 aaKnown RBP20.46■□□□□ 0.87
CLN3-207ENST00000395653 MLXIPLQ9NP71 852 aa20.46■□□□□ 0.87
CLN3-207ENST00000395653 OXSMQ9NWU1 459 aa20.46■□□□□ 0.87
CLN3-207ENST00000395653 G3BP2Q9UN86 482 aaKnown RBP20.46■□□□□ 0.87
CLN3-207ENST00000395653 SH3BGRLO75368 114 aa20.45■□□□□ 0.86
CLN3-207ENST00000395653 CDC123O75794 336 aaPredicted RBP20.45■□□□□ 0.86
CLN3-207ENST00000395653 NEK2P51955 445 aa20.45■□□□□ 0.86
CLN3-207ENST00000395653 EEF1A2Q05639 463 aaKnown RBP20.45■□□□□ 0.86
CLN3-207ENST00000395653 IFT88Q13099 833 aa20.45■□□□□ 0.86
CLN3-207ENST00000395653 CUL3Q13618 768 aa20.45■□□□□ 0.86
CLN3-207ENST00000395653 RUNX2Q13950 521 aa20.45■□□□□ 0.86
CLN3-207ENST00000395653 AP5B1Q2VPB7 878 aa20.45■□□□□ 0.86
CLN3-207ENST00000395653 TTC19Q6DKK2 380 aaPredicted RBP20.45■□□□□ 0.86
CLN3-207ENST00000395653 ZNF793Q6ZN11 406 aa20.45■□□□□ 0.86
CLN3-207ENST00000395653 QSOX2Q6ZRP7 698 aa20.45■□□□□ 0.86
CLN3-207ENST00000395653 GALNT16Q8N428 558 aa20.45■□□□□ 0.86
CLN3-207ENST00000395653 RGMAQ96B86 450 aa20.45■□□□□ 0.86
CLN3-207ENST00000395653 GSTO2Q9H4Y5 243 aa20.45■□□□□ 0.86
CLN3-207ENST00000395653 ELOVL6Q9H5J4 265 aa20.45■□□□□ 0.86
CLN3-207ENST00000395653 DAPP1Q9UN19 280 aa20.45■□□□□ 0.86
CLN3-207ENST00000395653 BOD1L1Q8NFC6 3051 aa20.45■□□□□ 0.86
CLN3-207ENST00000395653 MED13Q9UHV7 2174 aa20.45■□□□□ 0.86
CLN3-207ENST00000395653 IGHV1-45A0A0A0MS14 117 aa20.44■□□□□ 0.86
CLN3-207ENST00000395653 NSG1A0A0A6YYJ2 146 aa20.44■□□□□ 0.86
CLN3-207ENST00000395653 RGS16O15492 202 aaPredicted RBP20.44■□□□□ 0.86
CLN3-207ENST00000395653 B4GALT2O60909 372 aa20.44■□□□□ 0.86
CLN3-207ENST00000395653 OR4F21O95013 312 aa20.44■□□□□ 0.86
CLN3-207ENST00000395653 HIST1H1TP22492 207 aaPredicted RBP20.44■□□□□ 0.86
CLN3-207ENST00000395653 ATP5A1P25705 553 aaKnown RBP20.44■□□□□ 0.86
CLN3-207ENST00000395653 SSR2P43308 183 aa20.44■□□□□ 0.86
CLN3-207ENST00000395653 RAP1GDS1P52306 607 aa20.44■□□□□ 0.86
CLN3-207ENST00000395653 RAB38P57729 211 aa20.44■□□□□ 0.86
CLN3-207ENST00000395653 RCN2Q14257 317 aa20.44■□□□□ 0.86
CLN3-207ENST00000395653 LACTB2Q53H82 288 aaPredicted RBP20.44■□□□□ 0.86
CLN3-207ENST00000395653 CEP85LQ5SZL2 805 aa20.44■□□□□ 0.86
CLN3-207ENST00000395653 LRIG3Q6UXM1 1119 aa20.44■□□□□ 0.86
CLN3-207ENST00000395653 CCNYL1Q8N7R7 359 aa20.44■□□□□ 0.86
CLN3-207ENST00000395653 ACOT4Q8N9L9 421 aa20.44■□□□□ 0.86
CLN3-207ENST00000395653 ARMC2Q8NEN0 867 aa20.44■□□□□ 0.86
CLN3-207ENST00000395653 FDCSPQ8NFU4 85 aa20.44■□□□□ 0.86
CLN3-207ENST00000395653 ZNF700Q9H0M5 742 aa20.44■□□□□ 0.86
CLN3-207ENST00000395653 RIC8BQ9NVN3 520 aa20.44■□□□□ 0.86
CLN3-207ENST00000395653 GPR83Q9NYM4 423 aa20.44■□□□□ 0.86
CLN3-207ENST00000395653 SNX6Q9UNH7 406 aa20.44■□□□□ 0.86
CLN3-207ENST00000395653 CFAP46Q8IYW2 2715 aa20.44■□□□□ 0.86
CLN3-207ENST00000395653 OR2W5A6NFC9 320 aa20.44■□□□□ 0.86
CLN3-207ENST00000395653 MASP2O00187 686 aa20.44■□□□□ 0.86
CLN3-207ENST00000395653 SAP18O00422 153 aaKnown RBP20.44■□□□□ 0.86
CLN3-207ENST00000395653 RTCAO00442 366 aaKnown RBP20.44■□□□□ 0.86
CLN3-207ENST00000395653 PLPP1O14494 284 aa20.44■□□□□ 0.86
CLN3-207ENST00000395653 KLHL41O60662 606 aa20.44■□□□□ 0.86
CLN3-207ENST00000395653 SEMA3DO95025 777 aa20.44■□□□□ 0.86
CLN3-207ENST00000395653 PRB1P04280 392 aa20.44■□□□□ 0.86
CLN3-207ENST00000395653 LIM2P55344 173 aa20.44■□□□□ 0.86
CLN3-207ENST00000395653 PKNOX1P55347 436 aa20.44■□□□□ 0.86
CLN3-207ENST00000395653 MYBPC3Q14896 1274 aa20.44■□□□□ 0.86
CLN3-207ENST00000395653 ABRAXAS2Q15018 415 aa20.44■□□□□ 0.86
CLN3-207ENST00000395653 PCOLCEQ15113 449 aa20.44■□□□□ 0.86
CLN3-207ENST00000395653 NSDHLQ15738 373 aa20.44■□□□□ 0.86
CLN3-207ENST00000395653 BEND6Q5SZJ8 279 aaPredicted RBP20.44■□□□□ 0.86
CLN3-207ENST00000395653 LIPMQ5VYY2 423 aa20.44■□□□□ 0.86
CLN3-207ENST00000395653 OR4C11Q6IEV9 310 aa20.44■□□□□ 0.86
CLN3-207ENST00000395653 LANCL3Q6ZV70 420 aa20.44■□□□□ 0.86
CLN3-207ENST00000395653 GPRIN3Q6ZVF9 776 aa20.44■□□□□ 0.86
CLN3-207ENST00000395653 CPEB2Q7Z5Q1 589 aaKnown RBP20.44■□□□□ 0.86
CLN3-207ENST00000395653 SERPINI1Q99574 410 aa20.44■□□□□ 0.86
CLN3-207ENST00000395653 SLC29A3Q9BZD2 475 aa20.44■□□□□ 0.86
CLN3-207ENST00000395653 ZNF160Q9HCG1 818 aa20.44■□□□□ 0.86
CLN3-207ENST00000395653 LYRM4Q9HD34 91 aa20.44■□□□□ 0.86
CLN3-207ENST00000395653 MRPS33Q9Y291 106 aaKnown RBP20.44■□□□□ 0.86
CLN3-207ENST00000395653 TP53TG5Q9Y2B4 290 aa20.44■□□□□ 0.86
CLN3-207ENST00000395653 PCDHGB7Q9Y5F8 929 aa20.44■□□□□ 0.86
CLN3-207ENST00000395653 A6NL46 340 aa20.43■□□□□ 0.86
CLN3-207ENST00000395653 PRMT3O60678 531 aa20.43■□□□□ 0.86
CLN3-207ENST00000395653 SPAG7O75391 227 aa20.43■□□□□ 0.86
CLN3-207ENST00000395653 C1QL1O75973 258 aa20.43■□□□□ 0.86
CLN3-207ENST00000395653 ETHE1O95571 254 aa20.43■□□□□ 0.86
CLN3-207ENST00000395653 NAGLUP54802 743 aa20.43■□□□□ 0.86
CLN3-207ENST00000395653 PCLAFQ15004 111 aa20.43■□□□□ 0.86
CLN3-207ENST00000395653 ANKRD37Q7Z713 158 aa20.43■□□□□ 0.86
CLN3-207ENST00000395653 ZCCHC7Q8N3Z6 543 aaKnown RBP20.43■□□□□ 0.86
CLN3-207ENST00000395653 TSLPQ969D9 159 aa20.43■□□□□ 0.86
CLN3-207ENST00000395653 MTFMTQ96DP5 389 aaKnown RBP20.43■□□□□ 0.86
CLN3-207ENST00000395653 PTCHD1Q96NR3 888 aa20.43■□□□□ 0.86
CLN3-207ENST00000395653 FAM111AQ96PZ2 611 aa20.43■□□□□ 0.86
CLN3-207ENST00000395653 TUBB6Q9BUF5 446 aa20.43■□□□□ 0.86
CLN3-207ENST00000395653 NUDT9Q9BW91 350 aa20.43■□□□□ 0.86
CLN3-207ENST00000395653 RRAGDQ9NQL2 400 aaPredicted RBP20.43■□□□□ 0.86
CLN3-207ENST00000395653 PRDM9Q9NQV7 894 aa20.43■□□□□ 0.86
CLN3-207ENST00000395653 ZNF71Q9NQZ8 489 aaPredicted RBP20.43■□□□□ 0.86
CLN3-207ENST00000395653 MMACHCQ9Y4U1 282 aa20.43■□□□□ 0.86
CLN3-207ENST00000395653 FAM227AF5H4B4 570 aa20.42■□□□□ 0.86
CLN3-207ENST00000395653 H3BQF6 201 aa20.42■□□□□ 0.86
CLN3-207ENST00000395653 TYROBPO43914 113 aa20.42■□□□□ 0.86
CLN3-207ENST00000395653 ESRRBO95718 433 aa20.42■□□□□ 0.86
CLN3-207ENST00000395653 ITGA3P26006 1051 aa20.42■□□□□ 0.86
CLN3-207ENST00000395653 PGDP52209 483 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms