RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 MFSD14CQ5VZR4 134 aa13.13□□□□□ -0.31
USP49-201ENST00000373006 WDR53Q7Z5U6 358 aaPredicted RBP13.13□□□□□ -0.31
USP49-201ENST00000373006 RNF130Q86XS8 419 aa13.13□□□□□ -0.31
USP49-201ENST00000373006 TAPBPLQ9BX59 468 aa13.13□□□□□ -0.31
USP49-201ENST00000373006 ACER3Q9NUN7 267 aa13.13□□□□□ -0.31
USP49-201ENST00000373006 TMEM39AQ9NV64 488 aa13.13□□□□□ -0.31
USP49-201ENST00000373006 MAP4K5Q9Y4K4 846 aa13.13□□□□□ -0.31
USP49-201ENST00000373006 TRBV5-4A0A0C4DH59 114 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 PRAMEF33A0A0G2JMD5 474 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 SCAMP2O15127 329 aaKnown RBP13.12□□□□□ -0.31
USP49-201ENST00000373006 PRAMEF10O60809 474 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 SRCP12931 536 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 RPL17P18621 184 aaKnown RBP13.12□□□□□ -0.31
USP49-201ENST00000373006 PSMA1P25786 263 aaKnown RBP13.12□□□□□ -0.31
USP49-201ENST00000373006 SCN1BQ07699 218 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 KCNA10Q16322 511 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 GGTA1PQ4G0N0 100 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 LIPKQ5VXJ0 399 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 METTL2BQ6P1Q9 378 aaKnown RBP13.12□□□□□ -0.31
USP49-201ENST00000373006 GLCCI1Q86VQ1 547 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 NPAS3Q8IXF0 933 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 GPR65Q8IYL9 337 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 CPA6Q8N4T0 437 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 VPS37AQ8NEZ2 397 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 C9orf43Q8TAL5 461 aaPredicted RBP13.12□□□□□ -0.31
USP49-201ENST00000373006 FOXJ1Q92949 421 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 A0A0B4J293 547 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 C2orf78A6NCI8 922 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 PLD2O14939 933 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 DPM1O60762 260 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 CDRT1O95170 752 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 GADD45GO95257 159 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 YES1P07947 543 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 JUPP14923 745 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 PCGF2P35227 344 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 SPAM1P38567 509 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 CSKP41240 450 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 NSG1P42857 185 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 SLC6A12P48065 614 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 HBA1P69905 142 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 PSPHP78330 225 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 VEPH1Q14D04 833 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 CCDC85BQ15834 202 aaPredicted RBP13.12□□□□□ -0.31
USP49-201ENST00000373006 UAP1L1Q3KQV9 507 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 RTP2Q5QGT7 225 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 FAM180BQ6P0A1 224 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 PRSS55Q6UWB4 352 aaPredicted RBP13.12□□□□□ -0.31
USP49-201ENST00000373006 SERPINA13PQ6UXR4 307 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 RNF31Q96EP0 1072 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 SLC12A9Q9BXP2 914 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 Q9Y3F1 56 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 HCN4Q9Y3Q4 1203 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 MGAT4DA6NG13 374 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 NPIPB15A6NHN6 443 aaPredicted RBP13.12□□□□□ -0.31
USP49-201ENST00000373006 E7EQ34 232 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 LRRTM2O43300 516 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 AKR7A2O43488 359 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 AP2A2O94973 939 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 MYL9P24844 172 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 RAB25P57735 213 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 PFN3P60673 137 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 MRPL58Q14197 206 aaKnown RBP13.12□□□□□ -0.31
USP49-201ENST00000373006 SPHARQ15513 63 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 YIF1BQ5BJH7 314 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 FRMPD2BQ6IN97 320 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 KRT73Q86Y46 540 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 APCDD1Q8J025 514 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 ASB11Q8WXH4 323 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 ASIC4Q96FT7 647 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 MED8Q96G25 268 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 DIRAS2Q96HU8 199 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 PKP4Q99569 1192 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 GDF15Q99988 308 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 CD84Q9UIB8 345 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 RAB23Q9ULC3 237 aa13.12□□□□□ -0.31
USP49-201ENST00000373006 A0A0X1KG70 313 aa13.11□□□□□ -0.31
USP49-201ENST00000373006 CSO75390 466 aaKnown RBP13.11□□□□□ -0.31
USP49-201ENST00000373006 SCG5P05408 212 aa13.11□□□□□ -0.31
USP49-201ENST00000373006 CRYBB2P43320 205 aa13.11□□□□□ -0.31
USP49-201ENST00000373006 GPR17Q13304 367 aa13.11□□□□□ -0.31
USP49-201ENST00000373006 SCARB2Q14108 478 aa13.11□□□□□ -0.31
USP49-201ENST00000373006 ZNF267Q14586 743 aaPredicted RBP13.11□□□□□ -0.31
USP49-201ENST00000373006 TEAD4Q15561 434 aa13.11□□□□□ -0.31
USP49-201ENST00000373006 STK11Q15831 433 aa13.11□□□□□ -0.31
USP49-201ENST00000373006 HECTD3Q5T447 861 aa13.11□□□□□ -0.31
USP49-201ENST00000373006 ABI3BPQ7Z7G0 1075 aa13.11□□□□□ -0.31
USP49-201ENST00000373006 AMIGO1Q86WK6 493 aa13.11□□□□□ -0.31
USP49-201ENST00000373006 ARHGAP39Q9C0H5 1083 aa13.11□□□□□ -0.31
USP49-201ENST00000373006 POLR2J2Q9GZM3 115 aaKnown RBP13.11□□□□□ -0.31
USP49-201ENST00000373006 SLC22A4Q9H015 551 aa13.11□□□□□ -0.31
USP49-201ENST00000373006 SNX7Q9UNH6 387 aa13.11□□□□□ -0.31
USP49-201ENST00000373006 RUVBL1Q9Y265 456 aaKnown RBP13.11□□□□□ -0.31
USP49-201ENST00000373006 CMAHPQ9Y471 501 aa13.11□□□□□ -0.31
USP49-201ENST00000373006 A0A1W2PQL4 384 aaPredicted RBP13.11□□□□□ -0.31
USP49-201ENST00000373006 FABP12A6NFH5 140 aa13.11□□□□□ -0.31
USP49-201ENST00000373006 B4DXG7 233 aa13.11□□□□□ -0.31
USP49-201ENST00000373006 ADAM12O43184 909 aa13.11□□□□□ -0.31
USP49-201ENST00000373006 IDSP22304 550 aa13.11□□□□□ -0.31
USP49-201ENST00000373006 CRISP1P54107 249 aa13.11□□□□□ -0.31
USP49-201ENST00000373006 RAE1P78406 368 aaKnown RBP13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms