RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 RAB23Q9ULC3 237 aa15.69■□□□□ 0.1
SDC4-201ENST00000372733 LRFN2Q9ULH4 789 aa15.69■□□□□ 0.1
SDC4-201ENST00000372733 ANAPC1Q9H1A4 1944 aa15.69■□□□□ 0.1
SDC4-201ENST00000372733 WWP2O00308 870 aa15.68■□□□□ 0.1
SDC4-201ENST00000372733 IGFBP1P08833 259 aaPredicted RBP15.68■□□□□ 0.1
SDC4-201ENST00000372733 PRKAR2AP13861 404 aaKnown RBP15.68■□□□□ 0.1
SDC4-201ENST00000372733 ELNP15502 786 aa15.68■□□□□ 0.1
SDC4-201ENST00000372733 ITGA2P17301 1181 aa15.68■□□□□ 0.1
SDC4-201ENST00000372733 PTPN5P54829 565 aa15.68■□□□□ 0.1
SDC4-201ENST00000372733 CDK6Q00534 326 aa15.68■□□□□ 0.1
SDC4-201ENST00000372733 SLAMF1Q13291 335 aa15.68■□□□□ 0.1
SDC4-201ENST00000372733 TBRG1Q3YBR2 411 aa15.68■□□□□ 0.1
SDC4-201ENST00000372733 CST9Q5W186 159 aa15.68■□□□□ 0.1
SDC4-201ENST00000372733 TXNDC8Q6A555 127 aa15.68■□□□□ 0.1
SDC4-201ENST00000372733 RAB43Q86YS6 212 aa15.68■□□□□ 0.1
SDC4-201ENST00000372733 LILRA3Q8N6C8 439 aaPredicted RBP15.68■□□□□ 0.1
SDC4-201ENST00000372733 ASCC1Q8N9N2 400 aaKnown RBP15.68■□□□□ 0.1
SDC4-201ENST00000372733 PCSK9Q8NBP7 692 aaKnown RBP15.68■□□□□ 0.1
SDC4-201ENST00000372733 OR52N2Q8NGI0 321 aa15.68■□□□□ 0.1
SDC4-201ENST00000372733 C17orf50Q8WW18 174 aa15.68■□□□□ 0.1
SDC4-201ENST00000372733 PHOX2BQ99453 314 aa15.68■□□□□ 0.1
SDC4-201ENST00000372733 MAPKAP1Q9BPZ7 522 aa15.68■□□□□ 0.1
SDC4-201ENST00000372733 TTYH2Q9BSA4 534 aa15.68■□□□□ 0.1
SDC4-201ENST00000372733 VN1R3Q9BXE9 311 aa15.68■□□□□ 0.1
SDC4-201ENST00000372733 ZDHHC6Q9H6R6 413 aa15.68■□□□□ 0.1
SDC4-201ENST00000372733 PLSCR3Q9NRY6 295 aa15.68■□□□□ 0.1
SDC4-201ENST00000372733 A0A1W2PQ09 198 aa15.68■□□□□ 0.1
SDC4-201ENST00000372733 TRBC2A0A5B9 178 aa15.68■□□□□ 0.1
SDC4-201ENST00000372733 MANSC4A6NHS7 340 aaPredicted RBP15.68■□□□□ 0.1
SDC4-201ENST00000372733 SAP18O00422 153 aaKnown RBP15.68■□□□□ 0.1
SDC4-201ENST00000372733 NDUFB5O43674 189 aa15.68■□□□□ 0.1
SDC4-201ENST00000372733 SGTAO43765 313 aa15.68■□□□□ 0.1
SDC4-201ENST00000372733 SOX14O95416 240 aa15.68■□□□□ 0.1
SDC4-201ENST00000372733 GSTM1P09488 218 aa15.68■□□□□ 0.1
SDC4-201ENST00000372733 HNF4AP41235 474 aa15.68■□□□□ 0.1
SDC4-201ENST00000372733 PREPP48147 710 aa15.68■□□□□ 0.1
SDC4-201ENST00000372733 SPINT3P49223 89 aa15.68■□□□□ 0.1
SDC4-201ENST00000372733 CRISP1P54107 249 aa15.68■□□□□ 0.1
SDC4-201ENST00000372733 PRKCZQ05513 592 aa15.68■□□□□ 0.1
SDC4-201ENST00000372733 TMPRSS11AQ6ZMR5 421 aa15.68■□□□□ 0.1
SDC4-201ENST00000372733 Q6ZNB5 142 aa15.68■□□□□ 0.1
SDC4-201ENST00000372733 WDR53Q7Z5U6 358 aaPredicted RBP15.68■□□□□ 0.1
SDC4-201ENST00000372733 TAGAPQ8N103 731 aa15.68■□□□□ 0.1
SDC4-201ENST00000372733 MMP28Q9H239 520 aa15.68■□□□□ 0.1
SDC4-201ENST00000372733 BRF2Q9HAW0 419 aa15.68■□□□□ 0.1
SDC4-201ENST00000372733 C3orf14Q9HBI5 128 aa15.68■□□□□ 0.1
SDC4-201ENST00000372733 TIGARQ9NQ88 270 aa15.68■□□□□ 0.1
SDC4-201ENST00000372733 TBC1D14Q9P2M4 693 aa15.68■□□□□ 0.1
SDC4-201ENST00000372733 GRIP1Q9Y3R0 1128 aa15.68■□□□□ 0.1
SDC4-201ENST00000372733 SH3D21A4FU49 640 aa15.67■□□□□ 0.1
SDC4-201ENST00000372733 RECKO95980 971 aa15.67■□□□□ 0.1
SDC4-201ENST00000372733 SCG5P05408 212 aa15.67■□□□□ 0.1
SDC4-201ENST00000372733 SRCP12931 536 aa15.67■□□□□ 0.1
SDC4-201ENST00000372733 IL7P13232 177 aa15.67■□□□□ 0.1
SDC4-201ENST00000372733 HSD3B1P14060 373 aa15.67■□□□□ 0.1
SDC4-201ENST00000372733 HSD3B2P26439 372 aa15.67■□□□□ 0.1
SDC4-201ENST00000372733 CST5P28325 142 aaPredicted RBP15.67■□□□□ 0.1
SDC4-201ENST00000372733 SOAT1P35610 550 aa15.67■□□□□ 0.1
SDC4-201ENST00000372733 EEF1A2Q05639 463 aaKnown RBP15.67■□□□□ 0.1
SDC4-201ENST00000372733 ZNF33BQ06732 778 aa15.67■□□□□ 0.1
SDC4-201ENST00000372733 FCHO2Q0JRZ9 810 aa15.67■□□□□ 0.1
SDC4-201ENST00000372733 SLC5A12Q1EHB4 618 aa15.67■□□□□ 0.1
SDC4-201ENST00000372733 MPEG1Q2M385 716 aa15.67■□□□□ 0.1
SDC4-201ENST00000372733 FRMPD2BQ6IN97 320 aa15.67■□□□□ 0.1
SDC4-201ENST00000372733 SLC44A2Q8IWA5 706 aaPredicted RBP15.67■□□□□ 0.1
SDC4-201ENST00000372733 LAS2Q8IYD9 372 aa15.67■□□□□ 0.1
SDC4-201ENST00000372733 SETD6Q8TBK2 473 aa15.67■□□□□ 0.1
SDC4-201ENST00000372733 SUV39H2Q9H5I1 410 aa15.67■□□□□ 0.1
SDC4-201ENST00000372733 ASAH2Q9NR71 780 aa15.67■□□□□ 0.1
SDC4-201ENST00000372733 C1GALT1Q9NS00 363 aa15.67■□□□□ 0.1
SDC4-201ENST00000372733 ABCB8Q9NUT2 735 aa15.67■□□□□ 0.1
SDC4-201ENST00000372733 LSM2Q9Y333 95 aaKnown RBP15.67■□□□□ 0.1
SDC4-201ENST00000372733 ENPP4Q9Y6X5 453 aa15.67■□□□□ 0.1
SDC4-201ENST00000372733 A8MVJ9 347 aa15.67■□□□□ 0.1
SDC4-201ENST00000372733 CSO75390 466 aaKnown RBP15.67■□□□□ 0.1
SDC4-201ENST00000372733 SLC16A8O95907 504 aa15.67■□□□□ 0.1
SDC4-201ENST00000372733 SPIN4Q56A73 249 aa15.67■□□□□ 0.1
SDC4-201ENST00000372733 TMPRSS11BQ86T26 416 aa15.67■□□□□ 0.1
SDC4-201ENST00000372733 KRT73Q86Y46 540 aa15.67■□□□□ 0.1
SDC4-201ENST00000372733 GALNT12Q8IXK2 581 aa15.67■□□□□ 0.1
SDC4-201ENST00000372733 SLC34A3Q8N130 599 aa15.67■□□□□ 0.1
SDC4-201ENST00000372733 LMNTD1Q8N9Z9 388 aa15.67■□□□□ 0.1
SDC4-201ENST00000372733 DEPDC7Q96QD5 511 aa15.67■□□□□ 0.1
SDC4-201ENST00000372733 PKP4Q99569 1192 aa15.67■□□□□ 0.1
SDC4-201ENST00000372733 BHLHE41Q9C0J9 482 aaPredicted RBP15.67■□□□□ 0.1
SDC4-201ENST00000372733 REEP4Q9H6H4 257 aa15.67■□□□□ 0.1
SDC4-201ENST00000372733 TRBV4-1A0A0J9YWV2 114 aa15.66■□□□□ 0.1
SDC4-201ENST00000372733 CENPXA8MT69 81 aa15.66■□□□□ 0.1
SDC4-201ENST00000372733 UGT2B17O75795 530 aa15.66■□□□□ 0.1
SDC4-201ENST00000372733 CHI3L1P36222 383 aaPredicted RBP15.66■□□□□ 0.1
SDC4-201ENST00000372733 DDOSTP39656 456 aa15.66■□□□□ 0.1
SDC4-201ENST00000372733 MXD1Q05195 221 aa15.66■□□□□ 0.1
SDC4-201ENST00000372733 MADCAM1Q13477 382 aa15.66■□□□□ 0.1
SDC4-201ENST00000372733 TCTN1Q2MV58 587 aa15.66■□□□□ 0.1
SDC4-201ENST00000372733 TRIM60Q495X7 471 aa15.66■□□□□ 0.1
SDC4-201ENST00000372733 BCDIN3DQ7Z5W3 292 aaKnown RBP15.66■□□□□ 0.1
SDC4-201ENST00000372733 ECHDC3Q96DC8 303 aa15.66■□□□□ 0.1
SDC4-201ENST00000372733 SRRQ9GZT4 340 aa15.66■□□□□ 0.1
SDC4-201ENST00000372733 ZNF334Q9HCZ1 680 aaPredicted RBP15.66■□□□□ 0.1
SDC4-201ENST00000372733 PCDHGB2Q9Y5G2 931 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms