RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 PTPRCAPQ14761 206 aa14.32□□□□□ -0.12
CHD4-201ENST00000357008 OCLNQ16625 522 aa14.32□□□□□ -0.12
CHD4-201ENST00000357008 SLC25A25Q6KCM7 469 aa14.32□□□□□ -0.12
CHD4-201ENST00000357008 CHRDL2Q6WN34 429 aa14.32□□□□□ -0.12
CHD4-201ENST00000357008 CARM1Q86X55 608 aa14.32□□□□□ -0.12
CHD4-201ENST00000357008 OR8J1Q8NGP2 316 aa14.32□□□□□ -0.12
CHD4-201ENST00000357008 FUNDC2Q9BWH2 189 aa14.32□□□□□ -0.12
CHD4-201ENST00000357008 GPR88Q9GZN0 384 aa14.32□□□□□ -0.12
CHD4-201ENST00000357008 FARSAQ9Y285 508 aaKnown RBP14.32□□□□□ -0.12
CHD4-201ENST00000357008 PCDHB14Q9Y5E9 798 aa14.32□□□□□ -0.12
CHD4-201ENST00000357008 E7EQ34 232 aa14.32□□□□□ -0.12
CHD4-201ENST00000357008 FANCGO15287 622 aa14.32□□□□□ -0.12
CHD4-201ENST00000357008 KIAA0513O60268 411 aa14.32□□□□□ -0.12
CHD4-201ENST00000357008 CKMT1AP12532 417 aa14.32□□□□□ -0.12
CHD4-201ENST00000357008 NPRL3Q12980 569 aa14.32□□□□□ -0.12
CHD4-201ENST00000357008 KCTD9Q7L273 389 aa14.32□□□□□ -0.12
CHD4-201ENST00000357008 TIGD4Q8IY51 512 aa14.32□□□□□ -0.12
CHD4-201ENST00000357008 A0A0U1RQF3 1178 aa14.32□□□□□ -0.12
CHD4-201ENST00000357008 VNN2O95498 520 aa14.32□□□□□ -0.12
CHD4-201ENST00000357008 TMEM135Q86UB9 458 aa14.32□□□□□ -0.12
CHD4-201ENST00000357008 DDX51Q8N8A6 666 aaKnown RBP eCLIP14.32□□□□□ -0.12
CHD4-201ENST00000357008 C1orf74Q96LT6 269 aa14.32□□□□□ -0.12
CHD4-201ENST00000357008 NSUN5Q96P11 429 aaKnown RBP14.32□□□□□ -0.12
CHD4-201ENST00000357008 TRIB3Q96RU7 358 aa14.32□□□□□ -0.12
CHD4-201ENST00000357008 PAQR5Q9NXK6 330 aaPredicted RBP14.32□□□□□ -0.12
CHD4-201ENST00000357008 PCDHB11Q9Y5F2 797 aa14.32□□□□□ -0.12
CHD4-201ENST00000357008 SNED1Q8TER0 1413 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 LOC100509620A0A075B734 347 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 SOCS2O14508 198 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 HCRTO43612 131 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 CD97P48960 835 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 SLC35F1Q5T1Q4 408 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 DCUN1D3Q8IWE4 304 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 COQ8AQ8NI60 647 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 RAB8BQ92930 207 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 ERVK-11Q9UQG0 969 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 HMBOX1Q6NT76 420 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 ENPP7Q6UWV6 458 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 MSANTD3Q96H12 275 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 SPEF2Q9C093 1822 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 NPIPA5E9PKD4 350 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 DNASE1P24855 282 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 DCKP27707 260 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 PPP5CP53041 499 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 NFATC3Q12968 1075 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 SPHARQ15513 63 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 EXOC3L2Q2M3D2 409 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 LCN8Q6JVE9 175 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 BAIAP2L2Q6UXY1 529 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 POGLUT1Q8NBL1 392 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 SMPDL3BQ92485 455 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 RELTQ969Z4 430 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 HSPA12BQ96MM6 686 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 CCDC32Q9BV29 185 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 ZNF717Q9BY31 904 aaPredicted RBP14.31□□□□□ -0.12
CHD4-201ENST00000357008 CUEDC1Q9NWM3 386 aaPredicted RBP14.31□□□□□ -0.12
CHD4-201ENST00000357008 GRHPRQ9UBQ7 328 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 LAMP5Q9UJQ1 280 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 NPIPA1Q9UND3 350 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 SH3D21A4FU49 640 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 SNNO75324 88 aaPredicted RBP14.31□□□□□ -0.12
CHD4-201ENST00000357008 HSD17B1P14061 328 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 STEAP4Q687X5 459 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 FANK1Q8TC84 345 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 CPNE2Q96FN4 548 aaPredicted RBP14.31□□□□□ -0.12
CHD4-201ENST00000357008 SCRN2Q96FV2 425 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 DHRS1Q96LJ7 313 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 TAS2R3Q9NYW6 316 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 ZFR2Q9UPR6 939 aaKnown RBP14.31□□□□□ -0.12
CHD4-201ENST00000357008 VIRMAQ69YN4 1812 aaKnown RBP14.31□□□□□ -0.12
CHD4-201ENST00000357008 UGT2B10P36537 528 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 FNTBP49356 437 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 USF2Q15853 346 aaPredicted RBP14.31□□□□□ -0.12
CHD4-201ENST00000357008 DECR1Q16698 335 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 ZNF800Q2TB10 664 aaPredicted RBP eCLIP14.31□□□□□ -0.121e-7■■■□□ 16.6
CHD4-201ENST00000357008 PUS10Q3MIT2 529 aaKnown RBP14.31□□□□□ -0.12
CHD4-201ENST00000357008 OR5P2Q8WZ92 322 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 IMP4Q96G21 291 aaKnown RBP14.31□□□□□ -0.12
CHD4-201ENST00000357008 SEZ6LQ9BYH1 1024 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 SDHAF3Q9NRP4 125 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 MAGED1Q9Y5V3 778 aaPredicted RBP14.31□□□□□ -0.12
CHD4-201ENST00000357008 CAMTA1Q9Y6Y1 1673 aa14.31□□□□□ -0.12
CHD4-201ENST00000357008 A0A1B0GVT2 93 aa14.3□□□□□ -0.12
CHD4-201ENST00000357008 SLC1A7O00341 560 aa14.3□□□□□ -0.12
CHD4-201ENST00000357008 EEF1E1O43324 174 aaKnown RBP14.3□□□□□ -0.12
CHD4-201ENST00000357008 SPRYD7Q5W111 196 aa14.3□□□□□ -0.12
CHD4-201ENST00000357008 OTOP2Q7RTS6 562 aa14.3□□□□□ -0.12
CHD4-201ENST00000357008 ELMOD2Q8IZ81 293 aa14.3□□□□□ -0.12
CHD4-201ENST00000357008 TMEM168Q9H0V1 697 aa14.3□□□□□ -0.12
CHD4-201ENST00000357008 OARD1Q9Y530 152 aa14.3□□□□□ -0.12
CHD4-201ENST00000357008 SOBPA7XYQ1 873 aa14.3□□□□□ -0.12
CHD4-201ENST00000357008 BLOC1S5-TXNDC5H3BN57 136 aa14.3□□□□□ -0.12
CHD4-201ENST00000357008 PRKYO43930 277 aa14.3□□□□□ -0.12
CHD4-201ENST00000357008 RBBP9O75884 186 aa14.3□□□□□ -0.12
CHD4-201ENST00000357008 ITGA5P08648 1049 aa14.3□□□□□ -0.12
CHD4-201ENST00000357008 BCKDHAP12694 445 aa14.3□□□□□ -0.12
CHD4-201ENST00000357008 RAB8AP61006 207 aa14.3□□□□□ -0.12
CHD4-201ENST00000357008 PLEKHG7Q6ZR37 379 aa14.3□□□□□ -0.12
CHD4-201ENST00000357008 UBE2Q1Q7Z7E8 422 aa14.3□□□□□ -0.12
CHD4-201ENST00000357008 SEC61A2Q9H9S3 476 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms