RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 PIP5K1BO14986 540 aa20.94■□□□□ 0.94
SHMT1-203ENST00000354098 RRP8O43159 456 aaKnown RBP20.94■□□□□ 0.94
SHMT1-203ENST00000354098 EFSO43281 561 aa20.94■□□□□ 0.94
SHMT1-203ENST00000354098 B3GALT2O43825 422 aa20.94■□□□□ 0.94
SHMT1-203ENST00000354098 SKAP2O75563 359 aaPredicted RBP20.94■□□□□ 0.94
SHMT1-203ENST00000354098 SNUPNO95149 360 aaKnown RBP20.94■□□□□ 0.94
SHMT1-203ENST00000354098 CHEK2O96017 543 aa20.94■□□□□ 0.94
SHMT1-203ENST00000354098 ALBP02768 609 aa20.94■□□□□ 0.94
SHMT1-203ENST00000354098 ZNF10P21506 573 aaPredicted RBP20.94■□□□□ 0.94
SHMT1-203ENST00000354098 PTPN4P29074 926 aa20.94■□□□□ 0.94
SHMT1-203ENST00000354098 XCR1P46094 333 aa20.94■□□□□ 0.94
SHMT1-203ENST00000354098 RPL14P50914 215 aaKnown RBP20.94■□□□□ 0.94
SHMT1-203ENST00000354098 RPS15P62841 145 aaKnown RBP20.94■□□□□ 0.94
SHMT1-203ENST00000354098 BTKQ06187 659 aa20.94■□□□□ 0.94
SHMT1-203ENST00000354098 LAPTM4BQ86VI4 370 aa20.94■□□□□ 0.94
SHMT1-203ENST00000354098 DDIASQ8IXT1 998 aa20.94■□□□□ 0.94
SHMT1-203ENST00000354098 METTL4Q8N3J2 472 aa20.94■□□□□ 0.94
SHMT1-203ENST00000354098 OR2T11Q8NH01 316 aa20.94■□□□□ 0.94
SHMT1-203ENST00000354098 LRRC8CQ8TDW0 803 aa20.94■□□□□ 0.94
SHMT1-203ENST00000354098 GPR87Q9BY21 358 aa20.94■□□□□ 0.94
SHMT1-203ENST00000354098 RBCK1Q9BYM8 510 aa20.94■□□□□ 0.94
SHMT1-203ENST00000354098 ACTL8Q9H568 366 aa20.94■□□□□ 0.94
SHMT1-203ENST00000354098 SOX17Q9H6I2 414 aaPredicted RBP20.94■□□□□ 0.94
SHMT1-203ENST00000354098 MKKSQ9NPJ1 570 aaPredicted RBP20.94■□□□□ 0.94
SHMT1-203ENST00000354098 SSUH2Q9Y2M2 353 aa20.94■□□□□ 0.94
SHMT1-203ENST00000354098 ACACAQ13085 2346 aa20.93■□□□□ 0.94
SHMT1-203ENST00000354098 VSTM2BA6NLU5 285 aa20.93■□□□□ 0.94
SHMT1-203ENST00000354098 SCELO95171 688 aa20.93■□□□□ 0.94
SHMT1-203ENST00000354098 JUNP05412 331 aaKnown RBP20.93■□□□□ 0.94
SHMT1-203ENST00000354098 ZGLP1P0C6A0 271 aa20.93■□□□□ 0.94
SHMT1-203ENST00000354098 ITPKBP27987 946 aa20.93■□□□□ 0.94
SHMT1-203ENST00000354098 ARFIP1P53367 373 aa20.93■□□□□ 0.94
SHMT1-203ENST00000354098 OCA2Q04671 838 aa20.93■□□□□ 0.94
SHMT1-203ENST00000354098 Q6ZSR9 355 aa20.93■□□□□ 0.94
SHMT1-203ENST00000354098 ZC3H7AQ8IWR0 971 aaKnown RBP20.93■□□□□ 0.94
SHMT1-203ENST00000354098 ARFGAP2Q8N6H7 521 aa20.93■□□□□ 0.94
SHMT1-203ENST00000354098 C1orf52Q8N6N3 182 aaKnown RBP20.93■□□□□ 0.94
SHMT1-203ENST00000354098 APIPQ96GX9 242 aa20.93■□□□□ 0.94
SHMT1-203ENST00000354098 CNTNAP3BQ96NU0 1288 aa20.93■□□□□ 0.94
SHMT1-203ENST00000354098 CCNL2Q96S94 520 aaPredicted RBP20.93■□□□□ 0.94
SHMT1-203ENST00000354098 SPSB2Q99619 263 aa20.93■□□□□ 0.94
SHMT1-203ENST00000354098 CNTNAP3Q9BZ76 1288 aa20.93■□□□□ 0.94
SHMT1-203ENST00000354098 ROGDIQ9GZN7 287 aa20.93■□□□□ 0.94
SHMT1-203ENST00000354098 DDX31Q9H8H2 851 aaKnown RBP20.93■□□□□ 0.94
SHMT1-203ENST00000354098 NMRK1Q9NWW6 199 aa20.93■□□□□ 0.94
SHMT1-203ENST00000354098 KCND3Q9UK17 655 aa20.93■□□□□ 0.94
SHMT1-203ENST00000354098 TCFL5Q9UL49 500 aa20.93■□□□□ 0.94
SHMT1-203ENST00000354098 PCDHGA6Q9Y5G7 932 aa20.93■□□□□ 0.94
SHMT1-203ENST00000354098 OR2W5A6NFC9 320 aa20.93■□□□□ 0.94
SHMT1-203ENST00000354098 FAM227AF5H4B4 570 aa20.93■□□□□ 0.94
SHMT1-203ENST00000354098 BMP10O95393 424 aa20.93■□□□□ 0.94
SHMT1-203ENST00000354098 KLK1P06870 262 aa20.93■□□□□ 0.94
SHMT1-203ENST00000354098 TSFMP43897 325 aaKnown RBP20.93■□□□□ 0.94
SHMT1-203ENST00000354098 LIM2P55344 173 aa20.93■□□□□ 0.94
SHMT1-203ENST00000354098 SLAMF1Q13291 335 aa20.93■□□□□ 0.94
SHMT1-203ENST00000354098 IMPG1Q17R60 797 aa20.93■□□□□ 0.94
SHMT1-203ENST00000354098 SPDYAQ5MJ70 313 aa20.93■□□□□ 0.94
SHMT1-203ENST00000354098 RNF165Q6ZSG1 346 aa20.93■□□□□ 0.94
SHMT1-203ENST00000354098 COMMD6Q7Z4G1 85 aa20.93■□□□□ 0.94
SHMT1-203ENST00000354098 CHTF18Q8WVB6 975 aa20.93■□□□□ 0.94
SHMT1-203ENST00000354098 MIEF2Q96C03 454 aa20.93■□□□□ 0.94
SHMT1-203ENST00000354098 C3orf30Q96M34 536 aa20.93■□□□□ 0.94
SHMT1-203ENST00000354098 MAGEB18Q96M61 343 aa20.93■□□□□ 0.94
SHMT1-203ENST00000354098 MAPKAP1Q9BPZ7 522 aa20.93■□□□□ 0.94
SHMT1-203ENST00000354098 NPLQ9BXD5 320 aaPredicted RBP20.93■□□□□ 0.94
SHMT1-203ENST00000354098 WDR54Q9H977 334 aa20.93■□□□□ 0.94
SHMT1-203ENST00000354098 SLCO1B3Q9NPD5 702 aa20.93■□□□□ 0.94
SHMT1-203ENST00000354098 AHSPQ9NZD4 102 aa20.93■□□□□ 0.94
SHMT1-203ENST00000354098 MARCOQ9UEW3 520 aaPredicted RBP20.93■□□□□ 0.94
SHMT1-203ENST00000354098 PTRH2Q9Y3E5 179 aaKnown RBP20.93■□□□□ 0.94
SHMT1-203ENST00000354098 A0A0A6YYD5 115 aa20.92■□□□□ 0.94
SHMT1-203ENST00000354098 TMPRSS11DO60235 418 aa20.92■□□□□ 0.94
SHMT1-203ENST00000354098 TPP2P29144 1249 aaPredicted RBP20.92■□□□□ 0.94
SHMT1-203ENST00000354098 TLE3Q04726 772 aa20.92■□□□□ 0.94
SHMT1-203ENST00000354098 KLC1Q07866 573 aa20.92■□□□□ 0.94
SHMT1-203ENST00000354098 PDCD2Q16342 344 aaPredicted RBP20.92■□□□□ 0.94
SHMT1-203ENST00000354098 NUDT13Q86X67 352 aa20.92■□□□□ 0.94
SHMT1-203ENST00000354098 TGIF2Q9GZN2 237 aa20.92■□□□□ 0.94
SHMT1-203ENST00000354098 CLK4Q9HAZ1 481 aaKnown RBP20.92■□□□□ 0.94
SHMT1-203ENST00000354098 KCMF1Q9P0J7 381 aa20.92■□□□□ 0.94
SHMT1-203ENST00000354098 DAPP1Q9UN19 280 aa20.92■□□□□ 0.94
SHMT1-203ENST00000354098 URB1O60287 2271 aaKnown RBP20.91■□□□□ 0.94
SHMT1-203ENST00000354098 SLC28A1O00337 649 aa20.91■□□□□ 0.94
SHMT1-203ENST00000354098 CDC123O75794 336 aaPredicted RBP20.91■□□□□ 0.94
SHMT1-203ENST00000354098 KITP10721 976 aa20.91■□□□□ 0.94
SHMT1-203ENST00000354098 EFNA3P52797 238 aa20.91■□□□□ 0.94
SHMT1-203ENST00000354098 LRRC69Q6ZNQ3 347 aa20.91■□□□□ 0.94
SHMT1-203ENST00000354098 ZCCHC7Q8N3Z6 543 aaKnown RBP20.91■□□□□ 0.94
SHMT1-203ENST00000354098 OR2Y1Q8NGV0 311 aa20.91■□□□□ 0.94
SHMT1-203ENST00000354098 PPP1R36Q96LQ0 422 aa20.91■□□□□ 0.94
SHMT1-203ENST00000354098 FBXW2Q9UKT8 454 aa20.91■□□□□ 0.94
SHMT1-203ENST00000354098 ZMIZ1Q9ULJ6 1067 aa20.91■□□□□ 0.94
SHMT1-203ENST00000354098 A0A087WV48 116 aa20.9■□□□□ 0.94
SHMT1-203ENST00000354098 ATP6AP2A0A1C7CYW4 349 aa20.9■□□□□ 0.94
SHMT1-203ENST00000354098 RGS14O43566 566 aa20.9■□□□□ 0.94
SHMT1-203ENST00000354098 ATP6AP2O75787 350 aa20.9■□□□□ 0.94
SHMT1-203ENST00000354098 UMODP07911 640 aa20.9■□□□□ 0.94
SHMT1-203ENST00000354098 RNH1P13489 461 aaKnown RBP20.9■□□□□ 0.94
SHMT1-203ENST00000354098 RAE1P78406 368 aaKnown RBP20.9■□□□□ 0.94
SHMT1-203ENST00000354098 XKR7Q5GH72 579 aa20.9■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms