RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 FAM71E1Q6IPT2 247 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 VITQ6UXI7 678 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 GTF2IRD2Q86UP8 949 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 PDZD3Q86UT5 571 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 FAM124AQ86V42 546 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 LRRTM4Q86VH4 590 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 LAS2Q8IYD9 372 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 METTL4Q8N3J2 472 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 FAM81AQ8TBF8 368 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 RORBQ92753 470 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 C12orf66Q96MD2 445 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 NIPSNAP1Q9BPW8 284 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 BHLHE41Q9C0J9 482 aaPredicted RBP9.88□□□□□ -0.83
LIMA1-201ENST00000341247 TRIT1Q9H3H1 467 aaKnown RBP9.88□□□□□ -0.83
LIMA1-201ENST00000341247 EPHX3Q9H6B9 360 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 CXorf36Q9H7Y0 433 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP9.88□□□□□ -0.83
LIMA1-201ENST00000341247 KIAA1549LQ6ZVL6 1849 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 PRAMEF10O60809 474 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 BCAS1O75363 584 aaPredicted RBP9.88□□□□□ -0.83
LIMA1-201ENST00000341247 FUCA1P04066 466 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 SEMG1P04279 462 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 HOXB3P14651 431 aaPredicted RBP9.88□□□□□ -0.83
LIMA1-201ENST00000341247 IL1RNP18510 177 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 KELP23276 732 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 PCGF2P35227 344 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 DRD3P35462 400 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 TP53BP2Q13625 1128 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 SPDYE7PQ495Y7 208 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 C2orf27AQ580R0 203 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 KIAA1614Q5VZ46 1190 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 DCUN1D3Q8IWE4 304 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 HOMEZQ8IX15 550 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 ADGRF3Q8IZF5 1079 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 KRT78Q8N1N4 520 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 SETD9Q8NE22 299 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 HCAR2Q8TDS4 363 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 DTNBP1Q96EV8 351 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 APOL4Q9BPW4 351 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 RAD21L1Q9H4I0 556 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 SCN3BQ9NY72 215 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 ATP6V1HQ9UI12 483 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 DOCK8Q8NF50 2099 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 MYO10Q9HD67 2058 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 EPOPA6NHQ4 379 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 ZNF99A8MXY4 864 aaPredicted RBP9.87□□□□□ -0.83
LIMA1-201ENST00000341247 NME6O75414 186 aaPredicted RBP9.87□□□□□ -0.83
LIMA1-201ENST00000341247 LCKP06239 509 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 BCHEP06276 602 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 SLC35G4P0C7Q5 338 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 ITGAMP11215 1152 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 TAS2R38P59533 333 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 VBP1P61758 197 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 UBE3AQ05086 875 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 ZNF33BQ06732 778 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 RUNX3Q13761 415 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 KRT33BQ14525 404 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 IQCCQ4KMZ1 466 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 TMEM236Q5W0B7 351 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 CEACAM20Q6UY09 585 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 SLC9B2Q86UD5 537 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 YAF2Q8IY57 180 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 OR10G2Q8NGC3 310 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.87□□□□□ -0.83
LIMA1-201ENST00000341247 GIPC3Q8TF64 312 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 FAR1Q8WVX9 515 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 HERVK_113Q902F9 699 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 PROX1Q92786 737 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 ZNF514Q96K75 400 aaPredicted RBP9.87□□□□□ -0.83
LIMA1-201ENST00000341247 DPEP2Q9H4A9 486 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 PSME2Q9UL46 239 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 SLC6A14Q9UN76 642 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 LYVE1Q9Y5Y7 322 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 TRBV23OR9-2A0A075B6M9 112 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 PDZK1P1A8MUH7 402 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 FOXE1O00358 373 aaPredicted RBP9.87□□□□□ -0.83
LIMA1-201ENST00000341247 PCDH17O14917 1159 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 LCMT2O60294 686 aaKnown RBP9.87□□□□□ -0.83
LIMA1-201ENST00000341247 TNFRSF21O75509 655 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 TBX6O95947 436 aaPredicted RBP9.87□□□□□ -0.83
LIMA1-201ENST00000341247 C21orf33P30042 268 aaPredicted RBP9.87□□□□□ -0.83
LIMA1-201ENST00000341247 RYKP34925 604 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 MASP1P48740 699 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 PSMD7P51665 324 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 BMXP51813 675 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 PHEXP78562 749 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 MVKQ03426 396 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 MAD2L1BPQ15013 274 aaPredicted RBP9.87□□□□□ -0.83
LIMA1-201ENST00000341247 SYT16Q17RD7 645 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 C16orf87Q6PH81 154 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 DSG4Q86SJ6 1040 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 P3H2Q8IVL5 708 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 ALDH16A1Q8IZ83 802 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 LGI4Q8N135 537 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 OR52N2Q8NGI0 321 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 VANGL1Q8TAA9 524 aaPredicted RBP9.87□□□□□ -0.83
LIMA1-201ENST00000341247 RPL3LQ92901 407 aaKnown RBP9.87□□□□□ -0.83
LIMA1-201ENST00000341247 DOK1Q99704 481 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 TUBA1CQ9BQE3 449 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 TEX10Q9NXF1 929 aaPredicted RBP9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms