RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 ZNF296Q8WUU4 475 aaPredicted RBP11.45□□□□□ -0.58
USP1-201ENST00000339950 OR5M11Q96RB7 305 aa11.45□□□□□ -0.58
USP1-201ENST00000339950 CENPOQ9BU64 300 aa11.45□□□□□ -0.58
USP1-201ENST00000339950 YTHDF1Q9BYJ9 559 aaKnown RBP11.45□□□□□ -0.58
USP1-201ENST00000339950 HDHD2Q9H0R4 259 aa11.45□□□□□ -0.58
USP1-201ENST00000339950 TM9SF3Q9HD45 589 aa11.45□□□□□ -0.58
USP1-201ENST00000339950 KCNK5O95279 499 aa11.45□□□□□ -0.58
USP1-201ENST00000339950 OR12D1P0DN82 309 aa11.45□□□□□ -0.58
USP1-201ENST00000339950 ZNF750Q32MQ0 723 aa11.45□□□□□ -0.58
USP1-201ENST00000339950 C5orf22Q49AR2 442 aa11.45□□□□□ -0.58
USP1-201ENST00000339950 PRSS36Q5K4E3 855 aa11.45□□□□□ -0.58
USP1-201ENST00000339950 ATG9BQ674R7 924 aa11.45□□□□□ -0.58
USP1-201ENST00000339950 DEPDC4Q8N2C3 294 aa11.45□□□□□ -0.58
USP1-201ENST00000339950 ATL1Q8WXF7 558 aa11.45□□□□□ -0.58
USP1-201ENST00000339950 PAWRQ96IZ0 340 aaKnown RBP11.45□□□□□ -0.58
USP1-201ENST00000339950 TRPS1Q9UHF7 1281 aa11.45□□□□□ -0.58
USP1-201ENST00000339950 PLOD3O60568 738 aa11.45□□□□□ -0.58
USP1-201ENST00000339950 PRAMEF4O60810 478 aa11.45□□□□□ -0.58
USP1-201ENST00000339950 CPNE3O75131 537 aaKnown RBP11.45□□□□□ -0.58
USP1-201ENST00000339950 ALOX5P09917 674 aa11.45□□□□□ -0.58
USP1-201ENST00000339950 PRAMEF9Q5VWM5 478 aa11.45□□□□□ -0.58
USP1-201ENST00000339950 SPRED2Q7Z698 418 aa11.45□□□□□ -0.58
USP1-201ENST00000339950 ZZZ3Q8IYH5 903 aa11.45□□□□□ -0.58
USP1-201ENST00000339950 PEX13Q92968 403 aa11.45□□□□□ -0.58
USP1-201ENST00000339950 KLHL3Q9UH77 587 aa11.45□□□□□ -0.58
USP1-201ENST00000339950 YY2O15391 372 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 KIAA0513O60268 411 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 PTHP01270 115 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 GSTM5P46439 218 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 COQ5Q5HYK3 327 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 DCST1Q5T197 706 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 ASTLQ6HA08 431 aaPredicted RBP11.44□□□□□ -0.58
USP1-201ENST00000339950 TMIGD1Q6UXZ0 262 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 PTRH1Q86Y79 214 aaKnown RBP11.44□□□□□ -0.58
USP1-201ENST00000339950 DPP10Q8N608 796 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 TFGQ92734 400 aaPredicted RBP11.44□□□□□ -0.58
USP1-201ENST00000339950 IRF7Q92985 503 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 ITPAQ9BY32 194 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 NKIRAS2Q9NYR9 191 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 IL37Q9NZH6 218 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 FADS2P1A8MWK0 482 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 UPK1AO00322 258 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 ADAMDEC1O15204 470 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 F11P03951 625 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 ILF2Q12905 390 aaKnown RBP11.44□□□□□ -0.58
USP1-201ENST00000339950 MAD2L1BPQ15013 274 aaPredicted RBP11.44□□□□□ -0.58
USP1-201ENST00000339950 ZSWIM7Q19AV6 140 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 TRIM71Q2Q1W2 868 aaKnown RBP11.44□□□□□ -0.58
USP1-201ENST00000339950 LYPLAL1Q5VWZ2 237 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 SLC8B1Q6J4K2 584 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 GPR149Q86SP6 731 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 PARGQ86W56 976 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 UXS1Q8NBZ7 420 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 CXorf40AQ8TE69 158 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 GLYATL1Q969I3 302 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 C12orf66Q96MD2 445 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 TTYH2Q9BSA4 534 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 SIAEQ9HAT2 523 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 PCDHB11Q9Y5F2 797 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 OR52A4PA6NMU1 304 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 CDRT1O95170 752 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 JUPP14923 745 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 MAPK9P45984 424 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 CSRP3P50461 194 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 PPP2R2BQ00005 443 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 IL18R1Q13478 541 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 C1DQ13901 141 aaKnown RBP11.44□□□□□ -0.58
USP1-201ENST00000339950 RGNQ15493 299 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 DPY19L1Q2PZI1 675 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 CRTC2Q53ET0 693 aaPredicted RBP11.44□□□□□ -0.58
USP1-201ENST00000339950 XAF1Q6GPH4 301 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 PAQR6Q6TCH4 344 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 LRRC70Q7Z2Q7 622 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 ZNF480Q8WV37 535 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 ASB11Q8WXH4 323 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 TANKQ92844 425 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 TRNT1Q96Q11 434 aaKnown RBP11.44□□□□□ -0.58
USP1-201ENST00000339950 GAL3ST1Q99999 423 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 VN1R3Q9BXE9 311 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 DSN1Q9H410 356 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 IL1RAPQ9NPH3 570 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 TMEM184CQ9NVA4 438 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 TBCCD1Q9NVR7 557 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 SPEF1Q9Y4P9 236 aa11.44□□□□□ -0.58
USP1-201ENST00000339950 ARNTLO00327 626 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 TSPAN4O14817 238 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 SLC35G4P0C7Q5 338 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 MYL12AP19105 171 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 ANXA8L1Q5VT79 327 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 ZNF691Q5VV52 312 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 RIMKLAQ8IXN7 391 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 YAF2Q8IY57 180 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 RAD51AP1Q96B01 352 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 MGLLQ99685 303 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 TMED9Q9BVK6 235 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 SLC12A9Q9BXP2 914 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 RBCK1Q9BYM8 510 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 OR51V1Q9H2C8 321 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 ACOT13Q9NPJ3 140 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 ENPP5Q9UJA9 477 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms