RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 ZNF354BQ96LW1 612 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 ZNF599Q96NL3 588 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 SLC30A3Q99726 388 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 ADAM2Q99965 735 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 TREM1Q9NP99 234 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 ICKQ9UPZ9 632 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 TET3O43151 1660 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 PRODHO43272 600 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 FGF4P08620 206 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 CD58P19256 250 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 CEACAM6P40199 344 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 GLP1RP43220 463 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 LHX1P48742 406 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 FMO1Q01740 532 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 CBWD6Q4V339 395 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 SPIN4Q56A73 249 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 C9orf152Q5JTZ5 239 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 HEPHL1Q6MZM0 1159 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 SLC36A4Q6YBV0 504 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 SV2AQ7L0J3 742 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 PELI3Q8N2H9 469 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 OR10A6Q8NH74 314 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 FCRL3Q96P31 734 aaPredicted RBP4□□□□□ -1.77
NEDD4-201ENST00000338963 PKP4Q99569 1192 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 NTMT1Q9BV86 223 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 CD244Q9BZW8 370 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 OR52A5Q9H2C5 316 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 ABCB9Q9NP78 766 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 ERVK13-1Q9NX77 482 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 GAR1Q9NY12 217 aaKnown RBP4□□□□□ -1.77
NEDD4-201ENST00000338963 VNN3Q9NY84 501 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 GNG8Q9UK08 70 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 SPATA31A5Q5VU36 1347 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 SPATA31A3Q5VYP0 1347 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 SPATA31A7Q8IWB4 1347 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 A0A0D9SG52 128 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 WASH3PC4AMC7 463 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 GPR171O14626 319 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 PRKRAO75569 313 aaKnown RBP4□□□□□ -1.77
NEDD4-201ENST00000338963 GP1BAP07359 652 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 SPP1P10451 314 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 PIPP12273 146 aaPredicted RBP4□□□□□ -1.77
NEDD4-201ENST00000338963 GRM5P41594 1212 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 MAP2K4P45985 399 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 GSK3BP49841 420 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 NRLP54845 237 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 RAP1BP61224 184 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 MRPS10P82664 201 aaKnown RBP4□□□□□ -1.77
NEDD4-201ENST00000338963 BAATQ14032 418 aaPredicted RBP4□□□□□ -1.77
NEDD4-201ENST00000338963 PGM5Q15124 567 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 SMAD1Q15797 465 aaKnown RBP4□□□□□ -1.77
NEDD4-201ENST00000338963 SV2CQ496J9 727 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 FLYWCH1Q4VC44 716 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 KDM4DQ6B0I6 523 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 MED27Q6P2C8 311 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 OAFQ86UD1 273 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 GID4Q8IVV7 300 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 NLGN4XQ8N0W4 816 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 SPICQ8N5J4 248 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 MEIOBQ8N635 442 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 FAM71CQ8NEG0 241 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 ARL11Q969Q4 196 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 CMBLQ96DG6 245 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 MED8Q96G25 268 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 PDLIM5Q96HC4 596 aaKnown RBP4□□□□□ -1.77
NEDD4-201ENST00000338963 WDR77Q9BQA1 342 aaPredicted RBP4□□□□□ -1.77
NEDD4-201ENST00000338963 TMEM43Q9BTV4 400 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 DERL2Q9GZP9 239 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 WDR55Q9H6Y2 383 aaPredicted RBP4□□□□□ -1.77
NEDD4-201ENST00000338963 ISYNA1Q9NPH2 558 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 ABCB8Q9NUT2 735 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 PRG3Q9Y2Y8 225 aaPredicted RBP4□□□□□ -1.77
NEDD4-201ENST00000338963 TEX264Q9Y6I9 313 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 PREX2Q70Z35 1606 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 CLTCQ00610 1675 aaKnown RBP4□□□□□ -1.77
NEDD4-201ENST00000338963 PXDNQ92626 1479 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 ERI2A8K979 691 aaKnown RBP4□□□□□ -1.77
NEDD4-201ENST00000338963 ZNF670-ZNF695F2Z2N8 137 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 MKRN2OSH3BPM6 223 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 EFCAB14O75071 495 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 CBR3O75828 277 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 NDUFB10O96000 172 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 PNPP00491 289 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 NMBP08949 121 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 NR2C1P13056 603 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 ATF3P18847 181 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 S1PR1P21453 382 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 AZGP1P25311 298 aaKnown RBP4□□□□□ -1.77
NEDD4-201ENST00000338963 CRKLP46109 303 aaKnown RBP4□□□□□ -1.77
NEDD4-201ENST00000338963 PDZK1IP1Q13113 114 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 RAB33AQ14088 237 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 FAM69AQ5T7M9 428 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 IER5Q5VY09 327 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 MEDAGQ5VYS4 303 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 MFSD7Q6UXD7 560 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 GSG1LQ6UXU4 331 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 STK40Q8N2I9 435 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 TMEM132CQ8N3T6 1108 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 OR7G2Q8NG99 324 aa4□□□□□ -1.77
NEDD4-201ENST00000338963 OR1J4Q8NGS1 313 aa4□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms