RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 NAA10P41227 235 aaPredicted RBP12.19□□□□□ -0.46
SDC3-201ENST00000336798 FAM69BQ5VUD6 431 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 AGTRAPQ6RW13 159 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 ADGRD2Q7Z7M1 963 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 SLC44A3Q8N4M1 653 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 ASB3Q9Y575 518 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 HSD3B1P14060 373 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 PBX1P40424 430 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 RHDQ02161 417 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 ALG10BQ5I7T1 473 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 RAET1LQ5VY80 246 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 C22orf39Q6P5X5 142 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 SLC22A16Q86VW1 577 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 OR51G2Q8NGK0 314 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 OR6Q1Q8NGQ2 317 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 CPT1CQ8TCG5 803 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 PYURFQ96I23 114 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 PTCHD1Q96NR3 888 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 TWNKQ96RR1 684 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 USP29Q9HBJ7 922 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 XPNPEP1Q9NQW7 623 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 PRTFDC1Q9NRG1 225 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 KCND1Q9NSA2 647 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 PADI2Q9Y2J8 665 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 IFNA7P01567 189 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 OR12D1P0DN82 309 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 RPL35P42766 123 aaKnown RBP12.18□□□□□ -0.46
SDC3-201ENST00000336798 CD97P48960 835 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 AIMP2Q13155 320 aaKnown RBP12.18□□□□□ -0.46
SDC3-201ENST00000336798 WDR45BQ5MNZ6 344 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 PHTF2Q8N3S3 785 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 TCEANCQ8N8B7 351 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 FUBP3Q96I24 572 aaKnown RBP eCLIP12.18□□□□□ -0.46
SDC3-201ENST00000336798 FBXL20Q96IG2 436 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 FAXDC2Q96IV6 333 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 ATG5Q9H1Y0 275 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 A0A1W2PP55 124 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 HOXD12P35452 270 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 EEFSECP57772 596 aaKnown RBP12.18□□□□□ -0.46
SDC3-201ENST00000336798 EIF5AP63241 154 aaKnown RBP12.18□□□□□ -0.46
SDC3-201ENST00000336798 E2F1Q01094 437 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 GAS6Q14393 721 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 TMPPEQ6ZT21 453 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 C12orf43Q96C57 262 aaKnown RBP12.18□□□□□ -0.46
SDC3-201ENST00000336798 NSUN3Q9H649 340 aaKnown RBP12.18□□□□□ -0.46
SDC3-201ENST00000336798 MINDY3Q9H8M7 445 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 THUMPD1Q9NXG2 353 aaKnown RBP12.18□□□□□ -0.46
SDC3-201ENST00000336798 LGALS13Q9UHV8 139 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 DISC1C4P0D8 188 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 CRYZL1O95825 349 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 GSTM3P21266 225 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 ETV3P41162 512 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 SPANXN4Q5MJ08 99 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 SUSD3Q96L08 255 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 HINT2Q9BX68 163 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 GPR174Q9BXC1 333 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 STRADBQ9C0K7 418 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 DLGAP4Q9Y2H0 992 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 CMAHPQ9Y471 501 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 WDR45Q9Y484 360 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 BACE2Q9Y5Z0 518 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 FAM221BA6H8Z2 402 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 TNFSF12O43508 249 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 CSF2P04141 144 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 SLC18A2Q05940 514 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 CHRFAM7AQ494W8 412 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 ACSBG2Q5FVE4 666 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 GPRC6AQ5T6X5 926 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 USP53Q70EK8 1073 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 FAM86B1Q8N7N1 296 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 FBXL8Q96CD0 374 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 RBP7Q96R05 134 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 SDC3O75056 442 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 SOX30O94993 753 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 THEGLP0DJG4 465 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 CKMT1AP12532 417 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 MAGEA3P43357 314 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 FOXK1P85037 733 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 RHEBQ15382 184 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 RABL3Q5HYI8 236 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 GALNT12Q8IXK2 581 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 NPLOC4Q8TAT6 608 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 C10orf82Q8WW14 230 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 TSACCQ96A04 125 aaPredicted RBP12.18□□□□□ -0.46
SDC3-201ENST00000336798 S100A16Q96FQ6 103 aaKnown RBP12.18□□□□□ -0.46
SDC3-201ENST00000336798 MSANTD3Q96H12 275 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 ZNF649Q9BS31 505 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 TBCCD1Q9NVR7 557 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 MRPL15Q9P015 296 aaKnown RBP12.18□□□□□ -0.46
SDC3-201ENST00000336798 GPR34Q9UPC5 381 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 PCDHGB2Q9Y5G2 931 aa12.18□□□□□ -0.46
SDC3-201ENST00000336798 STK19P49842 368 aaPredicted RBP12.17□□□□□ -0.46
SDC3-201ENST00000336798 FUT2Q10981 343 aa12.17□□□□□ -0.46
SDC3-201ENST00000336798 MS4A13Q5J8X5 152 aa12.17□□□□□ -0.46
SDC3-201ENST00000336798 NCEH1Q6PIU2 408 aa12.17□□□□□ -0.46
SDC3-201ENST00000336798 OR9A1PQ8NGU1 263 aa12.17□□□□□ -0.46
SDC3-201ENST00000336798 ZNF431Q8TF32 576 aaPredicted RBP12.17□□□□□ -0.46
SDC3-201ENST00000336798 SOCS2O14508 198 aa12.17□□□□□ -0.46
SDC3-201ENST00000336798 H2BFMP0C1H6 154 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms