RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 GHRHRQ02643 423 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 HNRNPA0Q13151 305 aaKnown RBP13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 SLC10A1Q14973 349 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 CCNJQ5T5M9 372 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 KIAA0907Q7Z7F0 614 aaPredicted RBP13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 ZNF781Q8N8C0 355 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 FN3KRPQ9HA64 309 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 CAPN15O75808 1086 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 PAHP00439 452 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 CX3CR1P49238 355 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 GK2Q14410 553 aaPredicted RBP13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 C9orf57Q5W0N0 161 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 CPT1BQ92523 772 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 HAS2Q92819 552 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 TRBV23OR9-2A0A075B6M9 112 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 KHNYNO15037 678 aaKnown RBP13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 OR4F21O95013 312 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 SCGB1D1O95968 90 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 SLC2A5P22732 501 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 PRELID2Q8N945 189 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 THAP4Q8WY91 577 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 UPRTQ96BW1 309 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 HINT2Q9BX68 163 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 EXTL2Q9UBQ6 330 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 ENGP17813 658 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 CD34P28906 385 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 ARL16Q0P5N6 197 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 TMEM41BQ5BJD5 291 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 RBM23Q86U06 439 aaKnown RBP13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 CHTF18Q8WVB6 975 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 SLC25A44Q96H78 314 aaPredicted RBP13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 KCND1Q9NSA2 647 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 TAS2R9Q9NYW1 312 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 MGAT4BQ9UQ53 548 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 RAB11BQ15907 218 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 UBE2UQ5VVX9 321 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 NANOS1Q8WY41 292 aaKnown RBP13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 HYLS1Q96M11 299 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 SMIM10L2AP0DMW4 78 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 SMIM10L2BP0DMW5 78 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 BPIP17213 487 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 STRADBQ9C0K7 418 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 OAZ3Q9UMX2 235 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 SAP18O00422 153 aaKnown RBP13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 CDK1P06493 297 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 GLUD2P49448 558 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 HSD17B7P56937 341 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 PEA15Q15121 130 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 SUMF2Q8NBJ7 301 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 MYLIPQ8WY64 445 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 RAB39BQ96DA2 213 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 CD84Q9UIB8 345 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 EFCAB7A8K855 629 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 RPL35P42766 123 aaKnown RBP13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 TRAM2Q15035 370 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 ITPRIPL2Q3MIP1 535 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 ACER1Q8TDN7 264 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 GJD4Q96KN9 370 aaPredicted RBP13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 EIF2B3Q9NR50 452 aaKnown RBP13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 GJE1A6NN92 205 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 STK17BO94768 372 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 PRAMEF13Q5VWM6 474 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 PAOXQ6QHF9 649 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 KANSL1Q7Z3B3 1105 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 DNAJC22Q8N4W6 341 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 FUNDC2Q9BWH2 189 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 OR51I1Q9H343 314 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 A0A1W2PPM1 405 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 CLDN5O00501 218 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 TP53I11O14683 189 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 ABCB7O75027 752 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 TOB1P50616 345 aaPredicted RBP13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 ITFG2Q969R8 447 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 ZBTB45Q96K62 511 aaPredicted RBP13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 NAALAD2Q9Y3Q0 740 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 MTMR11A4FU01 709 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 TOR1AO14656 332 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 ZNF695Q8IW36 515 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 CMIPQ8IY22 773 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 MAL2Q969L2 176 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 SPATA31A3Q5VYP0 1347 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 ATP6V1G2-DDX39BF2Z307 99 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 EEF1E1O43324 174 aaKnown RBP13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 UCHL1P09936 223 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 PRAMEF14Q5SWL7 426 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 FSTL4Q6MZW2 842 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 OR9A4Q8NGU2 314 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 TCEAL2Q9H3H9 227 aaPredicted RBP13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 A8MUI8 341 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 E7ESA3 106 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 PRKCGP05129 697 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 OR1D2P34982 312 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 OR52B2Q96RD2 323 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 TEX10Q9NXF1 929 aaPredicted RBP13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 DNM1LO00429 736 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 BHLHE40O14503 412 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 CCL16O15467 120 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 APOA2P02652 100 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 ZNF43P17038 809 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 RHBDL3P58872 404 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms