RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 SLC22A8Q8TCC7 542 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 AURKBQ96GD4 344 aaPredicted RBP18.46■□□□□ 0.55
UPF1-201ENST00000262803 KLF8O95600 359 aaPredicted RBP18.45■□□□□ 0.54
UPF1-201ENST00000262803 CD72P21854 359 aa18.45■□□□□ 0.54
UPF1-201ENST00000262803 ACTC1P68032 377 aa18.45■□□□□ 0.54
UPF1-201ENST00000262803 ACTA1P68133 377 aa18.45■□□□□ 0.54
UPF1-201ENST00000262803 PITX1P78337 314 aaPredicted RBP18.45■□□□□ 0.54
UPF1-201ENST00000262803 PPP1R3AQ16821 1122 aa18.45■□□□□ 0.54
UPF1-201ENST00000262803 CLEC12AQ5QGZ9 265 aa18.45■□□□□ 0.54
UPF1-201ENST00000262803 KCTD18Q6PI47 426 aaPredicted RBP18.45■□□□□ 0.54
UPF1-201ENST00000262803 UNC5DQ6UXZ4 953 aa18.45■□□□□ 0.54
UPF1-201ENST00000262803 DGLUCYQ7Z3D6 616 aa18.45■□□□□ 0.54
UPF1-201ENST00000262803 ARMC5Q96C12 935 aa18.45■□□□□ 0.54
UPF1-201ENST00000262803 CDH10Q9Y6N8 788 aa18.45■□□□□ 0.54
UPF1-201ENST00000262803 XRN1Q8IZH2 1706 aaKnown RBP18.45■□□□□ 0.54
UPF1-201ENST00000262803 HRGP04196 525 aa18.45■□□□□ 0.54
UPF1-201ENST00000262803 ANXA3P12429 323 aa18.45■□□□□ 0.54
UPF1-201ENST00000262803 ADAM15Q13444 863 aa18.45■□□□□ 0.54
UPF1-201ENST00000262803 LRCH3Q96II8 777 aa18.45■□□□□ 0.54
UPF1-201ENST00000262803 RPF2Q9H7B2 306 aaKnown RBP18.45■□□□□ 0.54
UPF1-201ENST00000262803 PLCL2Q9UPR0 1127 aa18.45■□□□□ 0.54
UPF1-201ENST00000262803 KCNK6Q9Y257 313 aa18.45■□□□□ 0.54
UPF1-201ENST00000262803 DIO3P55073 304 aa18.45■□□□□ 0.54
UPF1-201ENST00000262803 TOMM5Q8N4H5 51 aa18.45■□□□□ 0.54
UPF1-201ENST00000262803 MR1Q95460 341 aa18.45■□□□□ 0.54
UPF1-201ENST00000262803 EIF3FO00303 357 aaPredicted RBP18.45■□□□□ 0.54
UPF1-201ENST00000262803 HTRA2O43464 458 aaPredicted RBP18.45■□□□□ 0.54
UPF1-201ENST00000262803 TCEA1P23193 301 aaKnown RBP18.45■□□□□ 0.54
UPF1-201ENST00000262803 RPS13P62277 151 aaKnown RBP18.45■□□□□ 0.54
UPF1-201ENST00000262803 PLEKHN1Q494U1 663 aaPredicted RBP18.45■□□□□ 0.54
UPF1-201ENST00000262803 CHERPQ8IWX8 916 aaKnown RBP18.45■□□□□ 0.54
UPF1-201ENST00000262803 ZUFSPQ96AP4 578 aa18.45■□□□□ 0.54
UPF1-201ENST00000262803 DMRTB1Q96MA1 342 aa18.45■□□□□ 0.54
UPF1-201ENST00000262803 DPAGT1Q9H3H5 408 aa18.45■□□□□ 0.54
UPF1-201ENST00000262803 HCN4Q9Y3Q4 1203 aa18.45■□□□□ 0.54
UPF1-201ENST00000262803 FBLP22087 321 aaKnown RBP18.44■□□□□ 0.54
UPF1-201ENST00000262803 PRKACGP22612 351 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 KCNC1P48547 511 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 CDH11P55287 796 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 UAP1L1Q3KQV9 507 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 HSH2DQ96JZ2 352 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 FIZ1Q96SL8 496 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 TBX5Q99593 518 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 HERPUD2Q9BSE4 406 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 TRPV4Q9HBA0 871 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 ZFR2Q9UPR6 939 aaKnown RBP18.44■□□□□ 0.54
UPF1-201ENST00000262803 PSMD9O00233 223 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 GNB5O14775 395 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 SLC2A2P11168 524 aaPredicted RBP18.44■□□□□ 0.54
UPF1-201ENST00000262803 GPR143P51810 404 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 CLRN1P58418 232 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 POU4F2Q12837 409 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 BAIAP2L2Q6UXY1 529 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 PAQR7Q86WK9 346 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 UMODL1-AS1Q8N2C9 162 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 ZNF366Q8N895 744 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 TMEM80Q96HE8 168 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 OR2AT4A6NND4 320 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 SDHDO14521 159 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 LAMTOR5O43504 91 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 B4GALT2O60909 372 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 JUNP05412 331 aaKnown RBP18.44■□□□□ 0.54
UPF1-201ENST00000262803 GRK5P34947 590 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 AP2S1P53680 142 aaPredicted RBP18.44■□□□□ 0.54
UPF1-201ENST00000262803 FOXK1P85037 733 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 CDKL1Q00532 357 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 C3P1Q6ZMU1 363 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 C15orf39Q6ZRI6 1047 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 RTL10Q7L3V2 364 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 ALPK1Q96QP1 1244 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 NPLQ9BXD5 320 aaPredicted RBP18.44■□□□□ 0.54
UPF1-201ENST00000262803 GPRC5BQ9NZH0 403 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 TMEM14AQ9Y6G1 99 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 PDYNP01213 254 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 FUT4P22083 530 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 STOMP27105 288 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 DCDC1P59894 354 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 HERV-K104P61576 105 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 CHAF1BQ13112 559 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 MEP1AQ16819 746 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 PSD4Q8NDX1 1056 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 RHEBL1Q8TAI7 183 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 C12orf43Q96C57 262 aaKnown RBP18.44■□□□□ 0.54
UPF1-201ENST00000262803 SMURF1Q9HCE7 757 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 HRASLS2Q9NWW9 162 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 OARD1Q9Y530 152 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 NALCNQ8IZF0 1738 aa18.44■□□□□ 0.54
UPF1-201ENST00000262803 J3QRK9 145 aa18.43■□□□□ 0.54
UPF1-201ENST00000262803 IL33O95760 270 aa18.43■□□□□ 0.54
UPF1-201ENST00000262803 HCKP08631 526 aa18.43■□□□□ 0.54
UPF1-201ENST00000262803 ITGA5P08648 1049 aa18.43■□□□□ 0.54
UPF1-201ENST00000262803 HOXB9P17482 250 aaPredicted RBP18.43■□□□□ 0.54
UPF1-201ENST00000262803 PRKCDQ05655 676 aa18.43■□□□□ 0.54
UPF1-201ENST00000262803 ELAVL3Q14576 367 aaKnown RBP18.43■□□□□ 0.54
UPF1-201ENST00000262803 C4orf46Q504U0 113 aa18.43■□□□□ 0.54
UPF1-201ENST00000262803 ARSJQ5FYB0 599 aaPredicted RBP18.43■□□□□ 0.54
UPF1-201ENST00000262803 KIAA0319Q5VV43 1072 aa18.43■□□□□ 0.54
UPF1-201ENST00000262803 SERINC5Q86VE9 423 aa18.43■□□□□ 0.54
UPF1-201ENST00000262803 OR8J3Q8NGG0 315 aa18.43■□□□□ 0.54
UPF1-201ENST00000262803 GLYATL1Q969I3 302 aa18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms