RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	SORBS1	Q9BX66	1292 aa	Known RBP	11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	COL25A1	Q9BXS0	654 aa	Predicted RBP	11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	REEP4	Q9H6H4	257 aa		11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	WDR41	Q9HAD4	459 aa		11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	PDE7B	Q9NP56	450 aa		11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	CROT	Q9UKG9	612 aa		11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	PLCL2	Q9UPR0	1127 aa		11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	COL5A1	P20908	1838 aa	Predicted RBP	11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	SPTB	P11277	2137 aa		11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	SCN2A	Q99250	2005 aa		11.19	□□□□□ -0.62
CLN6-223	ENST00000637823		A0A0A6YYD5	115 aa		11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	GABRR3	A8MPY1	467 aa		11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	TOX3	O15405	576 aa	Predicted RBP	11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	P2RX6	O15547	441 aa		11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	SH3BP5	O60239	455 aa		11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	TBX19	O60806	448 aa		11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	GUCY1B2	O75343	617 aa		11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	RASSF9	O75901	435 aa		11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	FAM58BP	P0C7Q3	252 aa		11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	ZNF888	P0CJ79	500 aa	Predicted RBP	11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	COX7A2	P14406	83 aa		11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	DDX5	P17844	614 aa	Known RBP	11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	HIST1H1T	P22492	207 aa	Predicted RBP	11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	MLLT3	P42568	568 aa	Predicted RBP	11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	GRK6	P43250	576 aa		11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	KIR3DL1	P43629	444 aa		11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	VSX2	P58304	361 aa	Predicted RBP	11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	PSME3	P61289	254 aa		11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	CCL7	P80098	99 aa		11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	DAB2	P98082	770 aa		11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	KLC1	Q07866	573 aa		11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	SLAMF1	Q13291	335 aa		11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	NFYC	Q13952	458 aa		11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	SLC9A5	Q14940	896 aa		11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	CLPP	Q16740	277 aa	Predicted RBP	11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	PAGE3	Q5JUK9	113 aa		11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	PERM1	Q5SV97	790 aa		11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	TCEAL6	Q6IPX3	200 aa		11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	PRMT9	Q6P2P2	845 aa		11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	TMEM71	Q6P5X7	295 aa		11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	ZNF793	Q6ZN11	406 aa		11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	ABHD13	Q7L211	337 aa		11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	PRSS42	Q7Z5A4	293 aa		11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	GPR180	Q86V85	440 aa		11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	KMT5C	Q86Y97	462 aa		11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	CSNK1A1L	Q8N752	337 aa		11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	ACOT4	Q8N9L9	421 aa		11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	SUMF1	Q8NBK3	374 aa		11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	OR7A2P	Q8NGA2	310 aa		11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	UTP15	Q8TED0	518 aa	Known RBP	11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	TCEAL3	Q969E4	200 aa		11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	LRRC58	Q96CX6	371 aa		11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	ITCH	Q96J02	903 aa		11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	THTPA	Q9BU02	230 aa		11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	ZMYND15	Q9H091	742 aa		11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	RMND5A	Q9H871	391 aa		11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	ATAD3A	Q9NVI7	634 aa		11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	FAM120C	Q9NX05	1096 aa	Known RBP	11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	SOHLH2	Q9NX45	425 aa		11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	LYAR	Q9NX58	379 aa	Known RBP	11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	PRPF19	Q9UMS4	504 aa	Known RBP	11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	EXO1	Q9UQ84	846 aa	Known RBP	11.19	□□□□□ -0.62
CLN6-223	ENST00000637823	MUC3A	Q02505	3323 aa		11.19	□□□□□ -0.62
CLN6-223	ENST00000637823		A0A088AWK7	358 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823		A0A0G2JN53	185 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	LNP1	A1A4G5	178 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	TMPRSS11D	O60235	418 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	SCEL	O95171	688 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	KCNH1	O95259	989 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	EIF2S1	P05198	315 aa	Known RBP	11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	IL3	P08700	152 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	FURIN	P09958	794 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	LAMP1	P11279	417 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	DRD2	P14416	443 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	ZNF10	P21506	573 aa	Predicted RBP	11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	CSF2RB	P32927	897 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	GABRA4	P48169	554 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	TRPC1	P48995	793 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	ARL4D	P49703	201 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	HNRNPF	P52597	415 aa	Known RBP	11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	MTTP	P55157	894 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	RAB8A	P61006	207 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	PHC1	P78364	1004 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	BTN3A2	P78410	334 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	HSD11B2	P80365	405 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	FOXM1	Q08050	763 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	LRRC74A	Q0VAA2	488 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	SLC14A1	Q13336	389 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	PDE7A	Q13946	482 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	HEPACAM	Q14CZ8	416 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	TRMT5	Q32P41	509 aa	Known RBP	11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	TCTE1	Q5JU00	501 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	WASHC2D	Q5SRD0	308 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	ANXA8L1	Q5VT79	327 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	OR4F3	Q6IEY1	312 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	MRM1	Q6IN84	353 aa	Known RBP	11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	TMEM214	Q6NUQ4	689 aa	Known RBP	11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	C8orf82	Q6P1X6	216 aa	Predicted RBP	11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	SLC2A7	Q6PXP3	512 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	RIPOR1	Q6ZS17	1223 aa		11.18	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms