RNA–Protein interactions for RNA: ENST00000636964.1

CLN6-217, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 3,335 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-217ENST00000636964 PSME2Q9UL46 239 aa11.05□□□□□ -0.64
CLN6-217ENST00000636964 MAGED1Q9Y5V3 778 aaPredicted RBP11.05□□□□□ -0.64
CLN6-217ENST00000636964 KCNE2Q9Y6J6 123 aa11.05□□□□□ -0.64
CLN6-217ENST00000636964 DENND4AQ7Z401 1863 aa11.05□□□□□ -0.64
CLN6-217ENST00000636964 NUP214P35658 2090 aaPredicted RBP11.05□□□□□ -0.64
CLN6-217ENST00000636964 C17orf113A0A1B0GUU1 675 aa11.05□□□□□ -0.64
CLN6-217ENST00000636964 EI24O14681 340 aa11.05□□□□□ -0.64
CLN6-217ENST00000636964 DFNA5O60443 496 aa11.05□□□□□ -0.64
CLN6-217ENST00000636964 ETHE1O95571 254 aa11.05□□□□□ -0.64
CLN6-217ENST00000636964 SNAP29O95721 258 aa11.05□□□□□ -0.64
CLN6-217ENST00000636964 SDC1P18827 310 aa11.05□□□□□ -0.64
CLN6-217ENST00000636964 TAP2Q03519 686 aa11.05□□□□□ -0.64
CLN6-217ENST00000636964 TRAP1Q12931 704 aaKnown RBP11.05□□□□□ -0.64
CLN6-217ENST00000636964 CCDC58Q4VC31 144 aa11.05□□□□□ -0.64
CLN6-217ENST00000636964 CAPN13Q6MZZ7 669 aaPredicted RBP11.05□□□□□ -0.64
CLN6-217ENST00000636964 PRMT9Q6P2P2 845 aa11.05□□□□□ -0.64
CLN6-217ENST00000636964 TBPL2Q6SJ96 375 aa11.05□□□□□ -0.64
CLN6-217ENST00000636964 MFSD4AQ8N468 514 aa11.05□□□□□ -0.64
CLN6-217ENST00000636964 WDR20Q8TBZ3 569 aa11.05□□□□□ -0.64
CLN6-217ENST00000636964 SLC13A3Q8WWT9 602 aa11.05□□□□□ -0.64
CLN6-217ENST00000636964 OR52E6Q96RD3 313 aa11.05□□□□□ -0.64
CLN6-217ENST00000636964 SLC17A9Q9BYT1 436 aa11.05□□□□□ -0.64
CLN6-217ENST00000636964 VAPAQ9P0L0 249 aa11.05□□□□□ -0.64
CLN6-217ENST00000636964 C2CD4DB7Z1M9 353 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 ANHXE9PGG2 379 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 GSNP06396 782 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 PGRP06401 933 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 HTR1AP08908 422 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 AMD1P17707 334 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 TTKP33981 857 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 SHMT2P34897 504 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 HLCSP50747 726 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 HNRNPFP52597 415 aaKnown RBP11.04□□□□□ -0.64
CLN6-217ENST00000636964 RAD23AP54725 363 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 PHC1P78364 1004 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 SKIV2LQ15477 1246 aaKnown RBP11.04□□□□□ -0.64
CLN6-217ENST00000636964 MAPKAPK3Q16644 382 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 GTDC1Q4AE62 458 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 KIAA1614Q5VZ46 1190 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 CHRDL2Q6WN34 429 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 SPRED1Q7Z699 444 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 ANKRD53Q8N9V6 530 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 TP53I13Q8NBR0 393 aaPredicted RBP11.04□□□□□ -0.64
CLN6-217ENST00000636964 GPR156Q8NFN8 814 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 CNDP2Q96KP4 475 aaKnown RBP11.04□□□□□ -0.64
CLN6-217ENST00000636964 KCTD14Q9BQ13 255 aaPredicted RBP11.04□□□□□ -0.64
CLN6-217ENST00000636964 MRPL39Q9NYK5 338 aaKnown RBP11.04□□□□□ -0.64
CLN6-217ENST00000636964 AURKCQ9UQB9 309 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 KCNK6Q9Y257 313 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 CA5BQ9Y2D0 317 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 IFT52Q9Y366 437 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 V9GYQ6 96 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 CLCNKAP51800 687 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 PLA2G16P53816 162 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 PYCR3Q53H96 274 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 NOXRED1Q6NXP6 359 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 HID1Q8IV36 788 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 ZNF740Q8NDX6 193 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 OR7G3Q8NG95 312 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 CMTM7Q96FZ5 175 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 SPNS1Q9H2V7 528 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 TTYH1Q9H313 450 aaPredicted RBP11.04□□□□□ -0.64
CLN6-217ENST00000636964 KCNK12Q9HB15 430 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 LTB4R2Q9NPC1 389 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 SLC6A13Q9NSD5 602 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 CCM2LQ9NUG4 571 aaPredicted RBP11.04□□□□□ -0.64
CLN6-217ENST00000636964 PCDHGA11Q9Y5H2 935 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 PMF1-BGLAPU3KQ54 211 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 TRIOBPQ9H2D6 2365 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 SAP18O00422 153 aaKnown RBP11.04□□□□□ -0.64
CLN6-217ENST00000636964 BCAS1O75363 584 aaPredicted RBP11.04□□□□□ -0.64
CLN6-217ENST00000636964 ADPRHP54922 357 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 PPP2CBP62714 309 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 RPS21P63220 83 aaKnown RBP11.04□□□□□ -0.64
CLN6-217ENST00000636964 PPP2CAP67775 309 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 TFF2Q03403 129 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 DPY19L1Q2PZI1 675 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 ABRAXAS1Q6UWZ7 409 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 SLCO4C1Q6ZQN7 724 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 RNF165Q6ZSG1 346 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 OR2T34Q8NGX1 318 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 LILRB4Q8NHJ6 448 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 HUS1BQ8NHY5 278 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 GTF2H4Q92759 462 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 SIPA1Q96FS4 1042 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 DHRS9Q9BPW9 319 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 TUBA1CQ9BQE3 449 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 BTBD2Q9BX70 525 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 TEX101Q9BY14 249 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 TP63Q9H3D4 680 aaPredicted RBP11.04□□□□□ -0.64
CLN6-217ENST00000636964 DPEP2Q9H4A9 486 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 CLMPQ9H6B4 373 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 VPS29Q9UBQ0 182 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.04□□□□□ -0.64
CLN6-217ENST00000636964 PPT2Q9UMR5 302 aa11.04□□□□□ -0.64
CLN6-217ENST00000636964 CLDN25C9JDP6 229 aa11.03□□□□□ -0.64
CLN6-217ENST00000636964 GBAP04062 536 aa11.03□□□□□ -0.64
CLN6-217ENST00000636964 JUNBP17275 347 aaPredicted RBP11.03□□□□□ -0.64
CLN6-217ENST00000636964 EFNA1P20827 205 aaPredicted RBP11.03□□□□□ -0.64
CLN6-217ENST00000636964 PNLIPRP1P54315 467 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms