RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 B3GALT2O43825 422 aa19.54■□□□□ 0.72
CLN3-240ENST00000631023 CEACAM4O75871 244 aa19.54■□□□□ 0.72
CLN3-240ENST00000631023 SUPT7LO94864 414 aa19.54■□□□□ 0.72
CLN3-240ENST00000631023 TBX6O95947 436 aaPredicted RBP19.54■□□□□ 0.72
CLN3-240ENST00000631023 TGFB1P01137 390 aa19.54■□□□□ 0.72
CLN3-240ENST00000631023 C8orf89P0DMQ9 161 aa19.54■□□□□ 0.72
CLN3-240ENST00000631023 MYL2P10916 166 aa19.54■□□□□ 0.72
CLN3-240ENST00000631023 IMPDH1P20839 514 aa19.54■□□□□ 0.72
CLN3-240ENST00000631023 PRKAA2P54646 552 aa19.54■□□□□ 0.72
CLN3-240ENST00000631023 SLC18A2Q05940 514 aa19.54■□□□□ 0.72
CLN3-240ENST00000631023 LACTB2Q53H82 288 aaPredicted RBP19.54■□□□□ 0.72
CLN3-240ENST00000631023 C10orf62Q5T681 223 aaPredicted RBP19.54■□□□□ 0.72
CLN3-240ENST00000631023 FAAH2Q6GMR7 532 aa19.54■□□□□ 0.72
CLN3-240ENST00000631023 TCTN3Q6NUS6 607 aa19.54■□□□□ 0.72
CLN3-240ENST00000631023 ABHD17CQ6PCB6 329 aa19.54■□□□□ 0.72
CLN3-240ENST00000631023 C4orf33Q8N1A6 199 aa19.54■□□□□ 0.72
CLN3-240ENST00000631023 SERINC2Q96SA4 455 aa19.54■□□□□ 0.72
CLN3-240ENST00000631023 TBCDQ9BTW9 1192 aa19.54■□□□□ 0.72
CLN3-240ENST00000631023 C19orf25Q9UFG5 118 aaPredicted RBP19.54■□□□□ 0.72
CLN3-240ENST00000631023 A6NL46 340 aa19.53■□□□□ 0.72
CLN3-240ENST00000631023 HPP00738 406 aa19.53■□□□□ 0.72
CLN3-240ENST00000631023 PRB1P04280 392 aa19.53■□□□□ 0.72
CLN3-240ENST00000631023 PTX3P26022 381 aaPredicted RBP19.53■□□□□ 0.72
CLN3-240ENST00000631023 MTTPP55157 894 aa19.53■□□□□ 0.72
CLN3-240ENST00000631023 CDH13P55290 713 aa19.53■□□□□ 0.72
CLN3-240ENST00000631023 CLCQ05315 142 aa19.53■□□□□ 0.72
CLN3-240ENST00000631023 TRAF3Q13114 568 aa19.53■□□□□ 0.72
CLN3-240ENST00000631023 ZRSR2Q15696 482 aaKnown RBP19.53■□□□□ 0.72
CLN3-240ENST00000631023 ZNF678Q5SXM1 525 aa19.53■□□□□ 0.72
CLN3-240ENST00000631023 TTC19Q6DKK2 380 aaPredicted RBP19.53■□□□□ 0.72
CLN3-240ENST00000631023 TMEM205Q6UW68 189 aa19.53■□□□□ 0.72
CLN3-240ENST00000631023 NDUFAF7Q7L592 441 aa19.53■□□□□ 0.72
CLN3-240ENST00000631023 CCDC63Q8NA47 563 aa19.53■□□□□ 0.72
CLN3-240ENST00000631023 RDH11Q8TC12 318 aa19.53■□□□□ 0.72
CLN3-240ENST00000631023 C8orf44Q96CB5 159 aa19.53■□□□□ 0.72
CLN3-240ENST00000631023 QRFPRQ96P65 431 aa19.53■□□□□ 0.72
CLN3-240ENST00000631023 CDK15Q96Q40 435 aa19.53■□□□□ 0.72
CLN3-240ENST00000631023 MTERF1Q99551 399 aaKnown RBP19.53■□□□□ 0.72
CLN3-240ENST00000631023 IQCGQ9H095 443 aaKnown RBP19.53■□□□□ 0.72
CLN3-240ENST00000631023 ZNF71Q9NQZ8 489 aaPredicted RBP19.53■□□□□ 0.72
CLN3-240ENST00000631023 GPR83Q9NYM4 423 aa19.53■□□□□ 0.72
CLN3-240ENST00000631023 EMCNQ9ULC0 261 aa19.53■□□□□ 0.72
CLN3-240ENST00000631023 A0A0G2JN53 185 aa19.53■□□□□ 0.72
CLN3-240ENST00000631023 C4orf51C9J302 202 aa19.53■□□□□ 0.72
CLN3-240ENST00000631023 DNAJB6O75190 326 aa19.53■□□□□ 0.72
CLN3-240ENST00000631023 ERLIN1O75477 346 aa19.53■□□□□ 0.72
CLN3-240ENST00000631023 PROCP04070 461 aa19.53■□□□□ 0.72
CLN3-240ENST00000631023 PGDP52209 483 aa19.53■□□□□ 0.72
CLN3-240ENST00000631023 SOX8P57073 446 aa19.53■□□□□ 0.72
CLN3-240ENST00000631023 C19orf57Q0VDD7 668 aa19.53■□□□□ 0.72
CLN3-240ENST00000631023 RCN2Q14257 317 aa19.53■□□□□ 0.72
CLN3-240ENST00000631023 AP5B1Q2VPB7 878 aa19.53■□□□□ 0.72
CLN3-240ENST00000631023 DEPDC1Q5TB30 811 aa19.53■□□□□ 0.72
CLN3-240ENST00000631023 IRAK1BP1Q5VVH5 260 aa19.53■□□□□ 0.72
CLN3-240ENST00000631023 KHDRBS2Q5VWX1 349 aaKnown RBP19.53■□□□□ 0.72
CLN3-240ENST00000631023 ZYG11AQ6WRX3 759 aa19.53■□□□□ 0.72
CLN3-240ENST00000631023 TRABD2AQ86V40 505 aa19.53■□□□□ 0.72
CLN3-240ENST00000631023 GALNT16Q8N428 558 aa19.53■□□□□ 0.72
CLN3-240ENST00000631023 PLPP5Q8NEB5 264 aa19.53■□□□□ 0.72
CLN3-240ENST00000631023 FDCSPQ8NFU4 85 aa19.53■□□□□ 0.72
CLN3-240ENST00000631023 L3HYPDHQ96EM0 354 aa19.53■□□□□ 0.72
CLN3-240ENST00000631023 RBCK1Q9BYM8 510 aa19.53■□□□□ 0.72
CLN3-240ENST00000631023 DMRT3Q9NQL9 472 aa19.53■□□□□ 0.72
CLN3-240ENST00000631023 PSD3Q9NYI0 1048 aa19.53■□□□□ 0.72
CLN3-240ENST00000631023 TP53TG5Q9Y2B4 290 aa19.53■□□□□ 0.72
CLN3-240ENST00000631023 STK38LQ9Y2H1 464 aa19.53■□□□□ 0.72
CLN3-240ENST00000631023 PCDHGB7Q9Y5F8 929 aa19.53■□□□□ 0.72
CLN3-240ENST00000631023 LOC102723996A0A087X1L8 192 aa19.52■□□□□ 0.71
CLN3-240ENST00000631023 NSG1A0A0A6YYJ2 146 aa19.52■□□□□ 0.71
CLN3-240ENST00000631023 A0A1W2PQ72 361 aa19.52■□□□□ 0.71
CLN3-240ENST00000631023 FOXE1O00358 373 aaPredicted RBP19.52■□□□□ 0.71
CLN3-240ENST00000631023 PLIN3O60664 434 aa19.52■□□□□ 0.71
CLN3-240ENST00000631023 CDC123O75794 336 aaPredicted RBP19.52■□□□□ 0.71
CLN3-240ENST00000631023 MLYCDO95822 493 aa19.52■□□□□ 0.71
CLN3-240ENST00000631023 RAP1GDS1P52306 607 aa19.52■□□□□ 0.71
CLN3-240ENST00000631023 NAA20P61599 178 aa19.52■□□□□ 0.71
CLN3-240ENST00000631023 NFATC3Q12968 1075 aa19.52■□□□□ 0.71
CLN3-240ENST00000631023 IFT88Q13099 833 aa19.52■□□□□ 0.71
CLN3-240ENST00000631023 NSDHLQ15738 373 aa19.52■□□□□ 0.71
CLN3-240ENST00000631023 GGTA1PQ4G0N0 100 aa19.52■□□□□ 0.71
CLN3-240ENST00000631023 UNC50Q53HI1 259 aa19.52■□□□□ 0.71
CLN3-240ENST00000631023 RPS27LQ71UM5 84 aaKnown RBP19.52■□□□□ 0.71
CLN3-240ENST00000631023 CA13Q8N1Q1 262 aa19.52■□□□□ 0.71
CLN3-240ENST00000631023 OR4F6Q8NGB9 312 aa19.52■□□□□ 0.71
CLN3-240ENST00000631023 ADAMTS18Q8TE60 1221 aa19.52■□□□□ 0.71
CLN3-240ENST00000631023 TRPC4APQ8TEL6 797 aa19.52■□□□□ 0.71
CLN3-240ENST00000631023 RGMAQ96B86 450 aa19.52■□□□□ 0.71
CLN3-240ENST00000631023 TMEM237Q96Q45 408 aa19.52■□□□□ 0.71
CLN3-240ENST00000631023 OR51B5Q9H339 312 aa19.52■□□□□ 0.71
CLN3-240ENST00000631023 MLXIPLQ9NP71 852 aa19.52■□□□□ 0.71
CLN3-240ENST00000631023 PRDM7Q9NQW5 492 aa19.52■□□□□ 0.71
CLN3-240ENST00000631023 LANCL2Q9NS86 450 aa19.52■□□□□ 0.71
CLN3-240ENST00000631023 MID2Q9UJV3 735 aa19.52■□□□□ 0.71
CLN3-240ENST00000631023 SMG1Q96Q15 3661 aaKnown RBP19.52■□□□□ 0.71
CLN3-240ENST00000631023 MAGEB17A8MXT2 336 aa19.51■□□□□ 0.71
CLN3-240ENST00000631023 PRMT3O60678 531 aa19.51■□□□□ 0.71
CLN3-240ENST00000631023 B4GALT2O60909 372 aa19.51■□□□□ 0.71
CLN3-240ENST00000631023 SH3BGRLO75368 114 aa19.51■□□□□ 0.71
CLN3-240ENST00000631023 ITGA3P26006 1051 aa19.51■□□□□ 0.71
CLN3-240ENST00000631023 ARFIP1P53367 373 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms