RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 RP1P56715 2156 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 TNFRSF10BO14763 440 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 TP73O15350 636 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 IFNW1P05000 195 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 PRKCGP05129 697 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 ZNF26P17031 533 aaPredicted RBP4.79□□□□□ -1.64
VPS13D-213ENST00000613099 PITPNBP48739 271 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 C17orf107Q6ZR85 190 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 BARD1Q99728 777 aaKnown RBP4.79□□□□□ -1.64
VPS13D-213ENST00000613099 ZNF670Q9BS34 389 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 DDX31Q9H8H2 851 aaKnown RBP4.79□□□□□ -1.64
VPS13D-213ENST00000613099 ACOT13Q9NPJ3 140 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 FAM217BQ9NTX9 383 aaPredicted RBP4.79□□□□□ -1.64
VPS13D-213ENST00000613099 FAM159BA6NKW6 160 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 PRODHO43272 600 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 COX7A2P14406 83 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 RHCEP18577 417 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 SOAT1P35610 550 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 IL2P60568 153 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 MRPS5P82675 430 aaKnown RBP4.79□□□□□ -1.64
VPS13D-213ENST00000613099 GCNT6Q5T4J0 391 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 DAW1Q8N136 415 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 C1orf216Q8TAB5 229 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 STK35Q8TDR2 534 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 ARMC5Q96C12 935 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 TPT1P8Q9HAU6 139 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 SLC6A5Q9Y345 797 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 SCO1O75880 301 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 PIAS1O75925 651 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 ETFAP13804 333 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 CHATP28329 748 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 HOXC9P31274 260 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 LIMK1P53667 647 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 TUSC1Q2TAM9 212 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 CNIH2Q6PI25 160 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 PPP1R13LQ8WUF5 828 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 SLC39A7Q92504 469 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 PTP4A1Q93096 173 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 SLC27A6Q9Y2P4 619 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 ASTN1O14525 1302 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 CACNA1CQ13936 2221 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 MS4A2Q01362 244 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 FAM26DQ5JW98 314 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 RNF219Q5W0B1 726 aaPredicted RBP4.79□□□□□ -1.64
VPS13D-213ENST00000613099 ACSF2Q96CM8 615 aaPredicted RBP4.79□□□□□ -1.64
VPS13D-213ENST00000613099 BTRCQ9Y297 605 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 A0A096LPI6 279 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 TPT1P13693 172 aaKnown RBP4.79□□□□□ -1.64
VPS13D-213ENST00000613099 SLC1A2P43004 574 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 TAF1AQ15573 450 aaPredicted RBP4.79□□□□□ -1.64
VPS13D-213ENST00000613099 PLAG1Q6DJT9 500 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 EXTL1Q92935 676 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 RNF11Q9Y3C5 154 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 TAF1LQ8IZX4 1826 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 USP17L15C9J2P7 530 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 USP17L13C9JLJ4 530 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 USP17L11C9JVI0 530 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 USP17L18D6R9N7 530 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 USP17L22D6RA61 530 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 USP17L17D6RBQ6 530 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 USP17L19D6RCP7 530 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 USP17L20D6RJB6 530 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 DNAJB6O75190 326 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 CPOXP36551 454 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 PSMD8P48556 350 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 CDK8P49336 464 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 USP17L24Q0WX57 530 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 ORC1Q13415 861 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 SOHLH1Q5JUK2 328 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 USP17L6PQ6QN14 398 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 CES3Q6UWW8 571 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 PSTKQ8IV42 348 aaKnown RBP4.79□□□□□ -1.64
VPS13D-213ENST00000613099 ADPRHL1Q8NDY3 354 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 GRIN3AQ8TCU5 1115 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 OR8D1Q8WZ84 308 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 MRPS31Q92665 395 aaKnown RBP4.79□□□□□ -1.64
VPS13D-213ENST00000613099 FTHL17Q9BXU8 183 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 POLR3FQ9H1D9 316 aaPredicted RBP4.79□□□□□ -1.64
VPS13D-213ENST00000613099 TAS2R10Q9NYW0 307 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 SCN7AQ01118 1682 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 GGT3PA6NGU5 568 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 RIIAD1A6NNX1 92 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 ZNF705FA8MVS1 300 aaPredicted RBP4.79□□□□□ -1.64
VPS13D-213ENST00000613099 USP17L8P0C7I0 530 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 ZNF705DP0CH99 300 aaPredicted RBP4.79□□□□□ -1.64
VPS13D-213ENST00000613099 ZNF705BP0CI00 300 aaPredicted RBP4.79□□□□□ -1.64
VPS13D-213ENST00000613099 CBSLP0DN79 551 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 NR2C1P13056 603 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 GABRB3P28472 473 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 CBSP35520 551 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 GGT2P36268 569 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 H3F3AP84243 136 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 ALKBH1Q13686 389 aaKnown RBP4.79□□□□□ -1.64
VPS13D-213ENST00000613099 SNTB1Q13884 538 aaKnown RBP4.79□□□□□ -1.64
VPS13D-213ENST00000613099 SYT6Q5T7P8 510 aaPredicted RBP4.79□□□□□ -1.64
VPS13D-213ENST00000613099 SLC36A4Q6YBV0 504 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 CELF2-AS1Q8N7Q2 184 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 OR4C5Q8NGB2 326 aa4.79□□□□□ -1.64
VPS13D-213ENST00000613099 CPNE2Q96FN4 548 aaPredicted RBP4.79□□□□□ -1.64
VPS13D-213ENST00000613099 ARL15Q9NXU5 204 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms