RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 MBD6Q96DN6 1003 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 FAR2Q96K12 515 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 SGCZQ96LD1 299 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 SGPP1Q9BX95 441 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 NPLQ9BXD5 320 aaPredicted RBP5.88□□□□□ -1.47
CUX1-220ENST00000607092 POLDIP3Q9BY77 421 aaKnown RBP5.88□□□□□ -1.47
CUX1-220ENST00000607092 LACRTQ9GZZ8 138 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 LANCL2Q9NS86 450 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 HPF1Q9NWY4 346 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 TAS2R13Q9NYV9 303 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 ZFP69BQ9UJL9 534 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 PPIEQ9UNP9 301 aaKnown RBP5.88□□□□□ -1.47
CUX1-220ENST00000607092 PCDHGB3Q9Y5G1 929 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 CSPG4Q6UVK1 2322 aa5.88□□□□□ -1.47
CUX1-220ENST00000607092 TRBV11-1A0A0K0K1C0 115 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 TMEM200CA6NKL6 621 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 OR1F1O43749 312 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 DYRK3O43781 588 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 SUSD5O60279 629 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 ZNF500O60304 480 aaPredicted RBP5.87□□□□□ -1.47
CUX1-220ENST00000607092 HCN1O60741 890 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 ITGA10O75578 1167 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 CTAG2O75638 210 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 CDC123O75794 336 aaPredicted RBP5.87□□□□□ -1.47
CUX1-220ENST00000607092 FTCDO95954 541 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 ENO2P09104 434 aaPredicted RBP5.87□□□□□ -1.47
CUX1-220ENST00000607092 KLK2P20151 261 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 MGAT1P26572 445 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 ARNTP27540 789 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 KIR2DL3P43628 341 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 SERPINB4P48594 390 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 ZNF75DP51815 510 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 EFNA3P52797 238 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 DGKQP52824 942 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 IST1P53990 364 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 PPIAP62937 165 aaKnown RBP5.87□□□□□ -1.47
CUX1-220ENST00000607092 CRADDP78560 199 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 HSF1Q00613 529 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 TFF3Q07654 80 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 PMPCAQ10713 525 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 BIKQ13323 160 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 NAE1Q13564 534 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 DHX34Q14147 1143 aaKnown RBP5.87□□□□□ -1.47
CUX1-220ENST00000607092 EFTUD2Q15029 972 aaKnown RBP eCLIP5.87□□□□□ -1.478e-8■■■■□ 20.9
CUX1-220ENST00000607092 CDSNQ15517 529 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 GXYLT1Q4G148 440 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 DEFB134Q4QY38 66 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 C4orf48Q5BLP8 95 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 WLSQ5T9L3 541 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 HECTD2Q5U5R9 776 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 OPN5Q6U736 354 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 CENPUQ71F23 418 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 BIVMQ86UB2 503 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 KIF18BQ86Y91 864 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 PDSS2Q86YH6 399 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 ZNF595Q8IYB9 648 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 DND1Q8IYX4 353 aaKnown RBP5.87□□□□□ -1.47
CUX1-220ENST00000607092 FAM109AQ8N4B1 249 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 GOLM1Q8NBJ4 401 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 KCT2Q8NC54 265 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 PSD4Q8NDX1 1056 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 OR4K1Q8NGD4 311 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 FAM222BQ8WU58 562 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 C1orf54Q8WWF1 131 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 ASB15Q8WXK1 588 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 TSLPQ969D9 159 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 KIAA1191Q96A73 305 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 FAM136AQ96C01 138 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 MFSD3Q96ES6 412 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 SNF8Q96H20 258 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 SMC6Q96SB8 1091 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 NPAS2Q99743 824 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 BAG1Q99933 345 aaPredicted RBP5.87□□□□□ -1.47
CUX1-220ENST00000607092 FAM173AQ9BQD7 235 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 AIF1LQ9BQI0 150 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 NAT9Q9BTE0 207 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 ROGDIQ9GZN7 287 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 PITHD1Q9GZP4 211 aaPredicted RBP5.87□□□□□ -1.47
CUX1-220ENST00000607092 ZDHHC11Q9H8X9 412 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 SYBUQ9NX95 663 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 ARL15Q9NXU5 204 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 MTRF1LQ9UGC7 380 aaKnown RBP5.87□□□□□ -1.47
CUX1-220ENST00000607092 ST6GALNAC2Q9UJ37 374 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 FBXW2Q9UKT8 454 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 TFR2Q9UP52 801 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 DYRK1BQ9Y463 629 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 KCNE2Q9Y6J6 123 aa5.87□□□□□ -1.47
CUX1-220ENST00000607092 SEC23IPQ9Y6Y8 1000 aaKnown RBP5.87□□□□□ -1.47
CUX1-220ENST00000607092 IGKV3D-11A0A0A0MRZ8 115 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 TCRBV7S2A1N4TA0A589 114 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 KRT87PA6NCN2 255 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 NKX2-6A6NCS4 301 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 HSPB2A8KAH6 182 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 GOLGA8KD6RF30 607 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 NPIPA2E9PIF3 369 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 NPIPA3F8WFD2 350 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 GOLGA8TH3BQL2 631 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 CES2O00748 559 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 AQP7O14520 342 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 DVL2O14641 736 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms