RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 MRPS25P82663 173 aaKnown RBP16.44■□□□□ 0.22
SHKBP1-223ENST00000600552 SLBPQ14493 270 aaKnown RBP eCLIP16.44■□□□□ 0.22
SHKBP1-223ENST00000600552 FASTKD3Q14CZ7 662 aaKnown RBP16.44■□□□□ 0.22
SHKBP1-223ENST00000600552 CDSNQ15517 529 aa16.44■□□□□ 0.22
SHKBP1-223ENST00000600552 PPP1R3AQ16821 1122 aa16.44■□□□□ 0.22
SHKBP1-223ENST00000600552 STEAP4Q687X5 459 aa16.44■□□□□ 0.22
SHKBP1-223ENST00000600552 GDF7Q7Z4P5 450 aa16.44■□□□□ 0.22
SHKBP1-223ENST00000600552 CLNKQ7Z7G1 428 aa16.44■□□□□ 0.22
SHKBP1-223ENST00000600552 ZC3HC1Q86WB0 502 aaKnown RBP16.44■□□□□ 0.22
SHKBP1-223ENST00000600552 SIAH3Q8IW03 269 aa16.44■□□□□ 0.22
SHKBP1-223ENST00000600552 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP16.44■□□□□ 0.22
SHKBP1-223ENST00000600552 GHDCQ8N2G8 530 aa16.44■□□□□ 0.22
SHKBP1-223ENST00000600552 TMEM156Q8N614 296 aa16.44■□□□□ 0.22
SHKBP1-223ENST00000600552 NFAM1Q8NET5 270 aaPredicted RBP16.44■□□□□ 0.22
SHKBP1-223ENST00000600552 CREB3L4Q8TEY5 395 aa16.44■□□□□ 0.22
SHKBP1-223ENST00000600552 AGAP11Q8TF27 550 aa16.44■□□□□ 0.22
SHKBP1-223ENST00000600552 SLCO2A1Q92959 643 aa16.44■□□□□ 0.22
SHKBP1-223ENST00000600552 AICDAQ9GZX7 198 aa16.44■□□□□ 0.22
SHKBP1-223ENST00000600552 LIN28AQ9H9Z2 209 aaKnown RBP16.44■□□□□ 0.22
SHKBP1-223ENST00000600552 GPAMQ9HCL2 828 aa16.44■□□□□ 0.22
SHKBP1-223ENST00000600552 ITGB1BP2Q9UKP3 347 aa16.44■□□□□ 0.22
SHKBP1-223ENST00000600552 ZNF835Q9Y2P0 537 aa16.44■□□□□ 0.22
SHKBP1-223ENST00000600552 TCRBV16S1A1N1A0A5B0 115 aa16.43■□□□□ 0.22
SHKBP1-223ENST00000600552 C19orf84I3L1E1 186 aa16.43■□□□□ 0.22
SHKBP1-223ENST00000600552 TFECO14948 347 aaPredicted RBP16.43■□□□□ 0.22
SHKBP1-223ENST00000600552 CLGNO14967 610 aa16.43■□□□□ 0.22
SHKBP1-223ENST00000600552 PDE9AO76083 593 aa16.43■□□□□ 0.22
SHKBP1-223ENST00000600552 SMIM10L1P0DMW3 83 aa16.43■□□□□ 0.22
SHKBP1-223ENST00000600552 C1GALT1C1LP0DN25 315 aa16.43■□□□□ 0.22
SHKBP1-223ENST00000600552 PLA2G16P53816 162 aa16.43■□□□□ 0.22
SHKBP1-223ENST00000600552 GPR85P60893 370 aa16.43■□□□□ 0.22
SHKBP1-223ENST00000600552 STXBP1P61764 594 aaKnown RBP16.43■□□□□ 0.22
SHKBP1-223ENST00000600552 SLC13A2Q13183 592 aa16.43■□□□□ 0.22
SHKBP1-223ENST00000600552 RUNX2Q13950 521 aa16.43■□□□□ 0.22
SHKBP1-223ENST00000600552 SYDE1Q6ZW31 735 aaPredicted RBP16.43■□□□□ 0.22
SHKBP1-223ENST00000600552 CEP97Q8IW35 865 aa16.43■□□□□ 0.22
SHKBP1-223ENST00000600552 LGI4Q8N135 537 aa16.43■□□□□ 0.22
SHKBP1-223ENST00000600552 SNX31Q8N9S9 440 aa16.43■□□□□ 0.22
SHKBP1-223ENST00000600552 FAM47BQ8NA70 645 aa16.43■□□□□ 0.22
SHKBP1-223ENST00000600552 MTFMTQ96DP5 389 aaKnown RBP16.43■□□□□ 0.22
SHKBP1-223ENST00000600552 SMIM10Q96HG1 83 aa16.43■□□□□ 0.22
SHKBP1-223ENST00000600552 VPS39Q96JC1 886 aa16.43■□□□□ 0.22
SHKBP1-223ENST00000600552 PRTFDC1Q9NRG1 225 aa16.43■□□□□ 0.22
SHKBP1-223ENST00000600552 SNX24Q9Y343 169 aa16.43■□□□□ 0.22
SHKBP1-223ENST00000600552 OARD1Q9Y530 152 aa16.43■□□□□ 0.22
SHKBP1-223ENST00000600552 APCP25054 2843 aa16.43■□□□□ 0.22
SHKBP1-223ENST00000600552 EFCAB8A8MWE9 144 aa16.42■□□□□ 0.22
SHKBP1-223ENST00000600552 PRRG2O14669 202 aa16.42■□□□□ 0.22
SHKBP1-223ENST00000600552 CLDN14O95500 239 aa16.42■□□□□ 0.22
SHKBP1-223ENST00000600552 IFNA16P05015 189 aa16.42■□□□□ 0.22
SHKBP1-223ENST00000600552 GNAZP19086 355 aa16.42■□□□□ 0.22
SHKBP1-223ENST00000600552 CLCN2P51788 898 aa16.42■□□□□ 0.22
SHKBP1-223ENST00000600552 GNG11P61952 73 aa16.42■□□□□ 0.22
SHKBP1-223ENST00000600552 TMIGD1Q6UXZ0 262 aa16.42■□□□□ 0.22
SHKBP1-223ENST00000600552 C16orf47Q6ZP98 133 aaPredicted RBP16.42■□□□□ 0.22
SHKBP1-223ENST00000600552 SLCO4C1Q6ZQN7 724 aa16.42■□□□□ 0.22
SHKBP1-223ENST00000600552 ZNF227Q86WZ6 799 aa16.42■□□□□ 0.22
SHKBP1-223ENST00000600552 DOLPP1Q86YN1 238 aa16.42■□□□□ 0.22
SHKBP1-223ENST00000600552 SULF2Q8IWU5 870 aa16.42■□□□□ 0.22
SHKBP1-223ENST00000600552 ZBED8Q8IZ13 594 aa16.42■□□□□ 0.22
SHKBP1-223ENST00000600552 CYP4Z2PQ8N1L4 340 aa16.42■□□□□ 0.22
SHKBP1-223ENST00000600552 B3GNT7Q8NFL0 401 aa16.42■□□□□ 0.22
SHKBP1-223ENST00000600552 EXT2Q93063 718 aa16.42■□□□□ 0.22
SHKBP1-223ENST00000600552 NCLNQ969V3 563 aa16.42■□□□□ 0.22
SHKBP1-223ENST00000600552 ESAMQ96AP7 390 aa16.42■□□□□ 0.22
SHKBP1-223ENST00000600552 LRRC39Q96DD0 335 aa16.42■□□□□ 0.22
SHKBP1-223ENST00000600552 CCDC77Q9BR77 488 aa16.42■□□□□ 0.22
SHKBP1-223ENST00000600552 CAB39LQ9H9S4 337 aa16.42■□□□□ 0.22
SHKBP1-223ENST00000600552 WWOXQ9NZC7 414 aa16.42■□□□□ 0.22
SHKBP1-223ENST00000600552 PPT2Q9UMR5 302 aa16.42■□□□□ 0.22
SHKBP1-223ENST00000600552 ERVK-11Q9UQG0 969 aa16.42■□□□□ 0.22
SHKBP1-223ENST00000600552 MTO1Q9Y2Z2 717 aaKnown RBP16.42■□□□□ 0.22
SHKBP1-223ENST00000600552 IGKV3D-11A0A0A0MRZ8 115 aa16.41■□□□□ 0.22
SHKBP1-223ENST00000600552 ANKDD1BA6NHY2 528 aa16.41■□□□□ 0.22
SHKBP1-223ENST00000600552 USP27XA6NNY8 438 aa16.41■□□□□ 0.22
SHKBP1-223ENST00000600552 B3GALT2O43825 422 aa16.41■□□□□ 0.22
SHKBP1-223ENST00000600552 PEX1O43933 1283 aa16.41■□□□□ 0.22
SHKBP1-223ENST00000600552 SEC31AO94979 1220 aaKnown RBP16.41■□□□□ 0.22
SHKBP1-223ENST00000600552 TPOP07202 933 aa16.41■□□□□ 0.22
SHKBP1-223ENST00000600552 HNRNPH1P31943 449 aaKnown RBP16.41■□□□□ 0.22
SHKBP1-223ENST00000600552 HNMTP50135 292 aa16.41■□□□□ 0.22
SHKBP1-223ENST00000600552 HNRNPFP52597 415 aaKnown RBP16.41■□□□□ 0.22
SHKBP1-223ENST00000600552 BMPR2Q13873 1038 aa16.41■□□□□ 0.22
SHKBP1-223ENST00000600552 Q6ZPB1 254 aaPredicted RBP16.41■□□□□ 0.22
SHKBP1-223ENST00000600552 ADAMTSL2Q86TH1 951 aa16.41■□□□□ 0.22
SHKBP1-223ENST00000600552 KLHDC8AQ8IYD2 350 aa16.41■□□□□ 0.22
SHKBP1-223ENST00000600552 KRT78Q8N1N4 520 aa16.41■□□□□ 0.22
SHKBP1-223ENST00000600552 TMEM52Q8NDY8 209 aa16.41■□□□□ 0.22
SHKBP1-223ENST00000600552 GAL3ST3Q96A11 431 aa16.41■□□□□ 0.22
SHKBP1-223ENST00000600552 RHBDF1Q96CC6 855 aa16.41■□□□□ 0.22
SHKBP1-223ENST00000600552 KRT12Q99456 494 aa16.41■□□□□ 0.22
SHKBP1-223ENST00000600552 KCNF1Q9H3M0 494 aa16.41■□□□□ 0.22
SHKBP1-223ENST00000600552 CLK4Q9HAZ1 481 aaKnown RBP16.41■□□□□ 0.22
SHKBP1-223ENST00000600552 KLF13Q9Y2Y9 288 aaPredicted RBP16.41■□□□□ 0.22
SHKBP1-223ENST00000600552 MMACHCQ9Y4U1 282 aa16.41■□□□□ 0.22
SHKBP1-223ENST00000600552 CACNA1CQ13936 2221 aa16.41■□□□□ 0.22
SHKBP1-223ENST00000600552 A0A1B0GTH9 108 aa16.4■□□□□ 0.22
SHKBP1-223ENST00000600552 KLRC4-KLRK1H3BQV0 150 aa16.4■□□□□ 0.22
SHKBP1-223ENST00000600552 CLDN4O14493 209 aa16.4■□□□□ 0.22
SHKBP1-223ENST00000600552 PHGDHO43175 533 aaKnown RBP16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms