RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 MDC1Q14676 2089 aaKnown RBP13.81□□□□□ -0.2
VRK3-217ENST00000599538 A0A1W2PRB8 838 aa13.81□□□□□ -0.2
VRK3-217ENST00000599538 KLHL33A6NCF5 533 aa13.81□□□□□ -0.2
VRK3-217ENST00000599538 C2CD4DB7Z1M9 353 aa13.81□□□□□ -0.2
VRK3-217ENST00000599538 B4GAT1O43505 415 aa13.81□□□□□ -0.2
VRK3-217ENST00000599538 TNFRSF21O75509 655 aa13.81□□□□□ -0.2
VRK3-217ENST00000599538 FKBP9O95302 570 aa13.81□□□□□ -0.2
VRK3-217ENST00000599538 SERPIND1P05546 499 aa13.81□□□□□ -0.2
VRK3-217ENST00000599538 ELK4P28324 431 aa13.81□□□□□ -0.2
VRK3-217ENST00000599538 ALDH9A1P49189 494 aa13.81□□□□□ -0.2
VRK3-217ENST00000599538 MAPK12P53778 367 aa13.81□□□□□ -0.2
VRK3-217ENST00000599538 PLA2G16P53816 162 aa13.81□□□□□ -0.2
VRK3-217ENST00000599538 VEZF1Q14119 521 aa13.81□□□□□ -0.2
VRK3-217ENST00000599538 IQCCQ4KMZ1 466 aa13.81□□□□□ -0.2
VRK3-217ENST00000599538 ENPP7Q6UWV6 458 aa13.81□□□□□ -0.2
VRK3-217ENST00000599538 FKBP9P1Q75LS8 142 aa13.81□□□□□ -0.2
VRK3-217ENST00000599538 EIF3MQ7L2H7 374 aaKnown RBP13.81□□□□□ -0.2
VRK3-217ENST00000599538 OR5K1Q8NHB7 308 aa13.81□□□□□ -0.2
VRK3-217ENST00000599538 TSACCQ96A04 125 aaPredicted RBP13.81□□□□□ -0.2
VRK3-217ENST00000599538 SCARF2Q96GP6 870 aaPredicted RBP13.81□□□□□ -0.2
VRK3-217ENST00000599538 BMFQ96LC9 184 aa13.81□□□□□ -0.2
VRK3-217ENST00000599538 C1QTNF7Q9BXJ2 289 aa13.81□□□□□ -0.2
VRK3-217ENST00000599538 PCBD2Q9H0N5 130 aa13.81□□□□□ -0.2
VRK3-217ENST00000599538 EPB41L1Q9H4G0 881 aa13.81□□□□□ -0.2
VRK3-217ENST00000599538 KLHL31Q9H511 634 aa13.81□□□□□ -0.2
VRK3-217ENST00000599538 RMI1Q9H9A7 625 aa13.81□□□□□ -0.2
VRK3-217ENST00000599538 SLC6A20Q9NP91 592 aa13.81□□□□□ -0.2
VRK3-217ENST00000599538 TEX10Q9NXF1 929 aaPredicted RBP13.81□□□□□ -0.2
VRK3-217ENST00000599538 TAS2R9Q9NYW1 312 aa13.81□□□□□ -0.2
VRK3-217ENST00000599538 TMEFF2Q9UIK5 374 aaPredicted RBP13.81□□□□□ -0.2
VRK3-217ENST00000599538 MAP4K5Q9Y4K4 846 aa13.81□□□□□ -0.2
VRK3-217ENST00000599538 GON4LQ3T8J9 2241 aa13.8□□□□□ -0.2
VRK3-217ENST00000599538 USP34Q70CQ2 3546 aa13.8□□□□□ -0.2
VRK3-217ENST00000599538 TRBV23OR9-2A0A075B6M9 112 aa13.8□□□□□ -0.2
VRK3-217ENST00000599538 SMIM31A0A1B0GVY4 71 aa13.8□□□□□ -0.2
VRK3-217ENST00000599538 C4orf51C9J302 202 aa13.8□□□□□ -0.2
VRK3-217ENST00000599538 PRICKLE3O43900 615 aaPredicted RBP13.8□□□□□ -0.2
VRK3-217ENST00000599538 MITFO75030 526 aaPredicted RBP13.8□□□□□ -0.2
VRK3-217ENST00000599538 TNFRSF1BP20333 461 aa13.8□□□□□ -0.2
VRK3-217ENST00000599538 GSTT1P30711 240 aa13.8□□□□□ -0.2
VRK3-217ENST00000599538 NR1H2P55055 460 aa13.8□□□□□ -0.2
VRK3-217ENST00000599538 ABRAXAS1Q6UWZ7 409 aa13.8□□□□□ -0.2
VRK3-217ENST00000599538 RNF130Q86XS8 419 aa13.8□□□□□ -0.2
VRK3-217ENST00000599538 SVOPLQ8N434 492 aa13.8□□□□□ -0.2
VRK3-217ENST00000599538 SLC44A3Q8N4M1 653 aa13.8□□□□□ -0.2
VRK3-217ENST00000599538 TRIML2Q8N7C3 387 aa13.8□□□□□ -0.2
VRK3-217ENST00000599538 OR2L8Q8NGY9 312 aa13.8□□□□□ -0.2
VRK3-217ENST00000599538 CREB3L4Q8TEY5 395 aa13.8□□□□□ -0.2
VRK3-217ENST00000599538 SDCCAG3Q96C92 435 aa13.8□□□□□ -0.2
VRK3-217ENST00000599538 NMD3Q96D46 503 aaKnown RBP13.8□□□□□ -0.2
VRK3-217ENST00000599538 TEFMQ96QE5 360 aaKnown RBP13.8□□□□□ -0.2
VRK3-217ENST00000599538 CXorf36Q9H7Y0 433 aa13.8□□□□□ -0.2
VRK3-217ENST00000599538 KCNK12Q9HB15 430 aa13.8□□□□□ -0.2
VRK3-217ENST00000599538 C1GALT1Q9NS00 363 aa13.8□□□□□ -0.2
VRK3-217ENST00000599538 FAM118AQ9NWS6 357 aa13.8□□□□□ -0.2
VRK3-217ENST00000599538 CD207Q9UJ71 328 aa13.8□□□□□ -0.2
VRK3-217ENST00000599538 MTCH2Q9Y6C9 303 aa13.8□□□□□ -0.2
VRK3-217ENST00000599538 ARHGEF17Q96PE2 2063 aaPredicted RBP13.8□□□□□ -0.2
VRK3-217ENST00000599538 H0YAE9 185 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 H3BSA7 217 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 NDUFS4O43181 175 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 HS6ST1O60243 411 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 SEMA3DO95025 777 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 ASGR2P07307 311 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 CXCR2P25025 360 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 SOAT1P35610 550 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 BCL6P41182 706 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 KCNJ10P78508 379 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 GRSF1Q12849 480 aaKnown RBP eCLIP13.79□□□□□ -0.2
VRK3-217ENST00000599538 KCNAB2Q13303 367 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 COL9A2Q14055 689 aaPredicted RBP13.79□□□□□ -0.2
VRK3-217ENST00000599538 OR2T5Q6IEZ7 315 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 TSEN54Q7Z6J9 526 aaKnown RBP13.79□□□□□ -0.2
VRK3-217ENST00000599538 CYP4Z1Q86W10 505 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 PJA1Q8NG27 643 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 OR2T29Q8NH02 315 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 OR2M4Q96R27 311 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 ASPSCR1Q9BZE9 553 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 RPS6KA6Q9UK32 745 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 TNRC18O15417 2968 aaPredicted RBP13.79□□□□□ -0.2
VRK3-217ENST00000599538 TRIM64A6NGJ6 449 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 MYO1GB0I1T2 1018 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 HAT1O14929 419 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 CAPN5O15484 640 aaPredicted RBP13.79□□□□□ -0.2
VRK3-217ENST00000599538 NARSO43776 548 aaKnown RBP13.79□□□□□ -0.2
VRK3-217ENST00000599538 PRKRAO75569 313 aaKnown RBP13.79□□□□□ -0.2
VRK3-217ENST00000599538 HPRP00739 348 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 FABP3P05413 133 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 ACADMP11310 421 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 DDCP20711 480 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 PPIBP23284 216 aaKnown RBP13.79□□□□□ -0.2
VRK3-217ENST00000599538 PCGF2P35227 344 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 ALDH3B2P48448 385 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 TPMTP51580 245 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 CTBSQ01459 385 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 CYP27C1Q4G0S4 372 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 KCTD21Q4G0X4 260 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 ZNF793Q6ZN11 406 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 IKBIPQ70UQ0 350 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 DCP2Q8IU60 420 aaKnown RBP13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms