RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.92□□□□□ -0.18
VRK3-212ENST00000596814 FAM234BA2RU67 622 aa13.92□□□□□ -0.18
VRK3-212ENST00000596814 TMPRSS11DO60235 418 aa13.92□□□□□ -0.18
VRK3-212ENST00000596814 PRMT3O60678 531 aa13.92□□□□□ -0.18
VRK3-212ENST00000596814 KLHL18O94889 574 aa13.92□□□□□ -0.18
VRK3-212ENST00000596814 SCELO95171 688 aa13.92□□□□□ -0.18
VRK3-212ENST00000596814 LRATO95237 230 aa13.92□□□□□ -0.18
VRK3-212ENST00000596814 B3GALT4O96024 378 aa13.92□□□□□ -0.18
VRK3-212ENST00000596814 ESRRAP11474 423 aaPredicted RBP13.92□□□□□ -0.18
VRK3-212ENST00000596814 PRPS1L1P21108 318 aa13.92□□□□□ -0.18
VRK3-212ENST00000596814 CALB2P22676 271 aa13.92□□□□□ -0.18
VRK3-212ENST00000596814 IL12AP29459 219 aa13.92□□□□□ -0.18
VRK3-212ENST00000596814 HPCAL1P37235 193 aa13.92□□□□□ -0.18
VRK3-212ENST00000596814 GSTM5P46439 218 aa13.92□□□□□ -0.18
VRK3-212ENST00000596814 POLR2JP52435 117 aaKnown RBP13.92□□□□□ -0.18
VRK3-212ENST00000596814 MTTPP55157 894 aa13.92□□□□□ -0.18
VRK3-212ENST00000596814 KCNK10P57789 538 aa13.92□□□□□ -0.18
VRK3-212ENST00000596814 TAS2R50P59544 299 aa13.92□□□□□ -0.18
VRK3-212ENST00000596814 BNIP1Q12981 228 aa13.92□□□□□ -0.18
VRK3-212ENST00000596814 CYLC2Q14093 348 aaPredicted RBP13.92□□□□□ -0.18
VRK3-212ENST00000596814 RCAN2Q14206 197 aa13.92□□□□□ -0.18
VRK3-212ENST00000596814 NDUFA9Q16795 377 aa13.92□□□□□ -0.18
VRK3-212ENST00000596814 DEFB134Q4QY38 66 aa13.92□□□□□ -0.18
VRK3-212ENST00000596814 RBM44Q6ZP01 1051 aaKnown RBP13.92□□□□□ -0.18
VRK3-212ENST00000596814 RIPOR1Q6ZS17 1223 aa13.92□□□□□ -0.18
VRK3-212ENST00000596814 ASCL5Q7RTU5 278 aa13.92□□□□□ -0.18
VRK3-212ENST00000596814 TMEM132CQ8N3T6 1108 aa13.92□□□□□ -0.18
VRK3-212ENST00000596814 ARHGEF39Q8N4T4 335 aa13.92□□□□□ -0.18
VRK3-212ENST00000596814 AMER3Q8N944 861 aa13.92□□□□□ -0.18
VRK3-212ENST00000596814 ACOT4Q8N9L9 421 aa13.92□□□□□ -0.18
VRK3-212ENST00000596814 TTC29Q8NA56 475 aaPredicted RBP13.92□□□□□ -0.18
VRK3-212ENST00000596814 STARD8Q92502 1023 aa13.92□□□□□ -0.18
VRK3-212ENST00000596814 GFM2Q969S9 779 aaKnown RBP13.92□□□□□ -0.18
VRK3-212ENST00000596814 TMEM74Q96NL1 305 aa13.92□□□□□ -0.18
VRK3-212ENST00000596814 PHOX2BQ99453 314 aa13.92□□□□□ -0.18
VRK3-212ENST00000596814 CLMPQ9H6B4 373 aa13.92□□□□□ -0.18
VRK3-212ENST00000596814 TXLNGQ9NUQ3 528 aa13.92□□□□□ -0.18
VRK3-212ENST00000596814 MAPRE3Q9UPY8 281 aa13.92□□□□□ -0.18
VRK3-212ENST00000596814 MRPS2Q9Y399 296 aaKnown RBP13.92□□□□□ -0.18
VRK3-212ENST00000596814 SLC22A7Q9Y694 548 aa13.92□□□□□ -0.18
VRK3-212ENST00000596814 SCN3AQ9NY46 2000 aa13.91□□□□□ -0.18
VRK3-212ENST00000596814 SPTBP11277 2137 aa13.91□□□□□ -0.18
VRK3-212ENST00000596814 LOC100653049A0A140TA62 436 aa13.91□□□□□ -0.18
VRK3-212ENST00000596814 FITM1A5D6W6 292 aa13.91□□□□□ -0.18
VRK3-212ENST00000596814 AKAP10O43572 662 aa13.91□□□□□ -0.18
VRK3-212ENST00000596814 OR2B3O76000 313 aa13.91□□□□□ -0.18
VRK3-212ENST00000596814 KRT34O76011 436 aa13.91□□□□□ -0.18
VRK3-212ENST00000596814 SNRPB2P08579 225 aaKnown RBP13.91□□□□□ -0.18
VRK3-212ENST00000596814 IL1RNP18510 177 aa13.91□□□□□ -0.18
VRK3-212ENST00000596814 LIMK1P53667 647 aa13.91□□□□□ -0.18
VRK3-212ENST00000596814 ITGA1P56199 1179 aa13.91□□□□□ -0.18
VRK3-212ENST00000596814 C21orf58P58505 322 aa13.91□□□□□ -0.18
VRK3-212ENST00000596814 TRA2BP62995 288 aaKnown RBP13.91□□□□□ -0.18
VRK3-212ENST00000596814 SNRPNP63162 240 aaKnown RBP13.91□□□□□ -0.18
VRK3-212ENST00000596814 E2F1Q01094 437 aa13.91□□□□□ -0.18
VRK3-212ENST00000596814 NHLH1Q02575 133 aa13.91□□□□□ -0.18
VRK3-212ENST00000596814 ACY1Q03154 408 aa13.91□□□□□ -0.18
VRK3-212ENST00000596814 ZFP36L1Q07352 338 aaKnown RBP13.91□□□□□ -0.18
VRK3-212ENST00000596814 SLAMF1Q13291 335 aa13.91□□□□□ -0.18
VRK3-212ENST00000596814 GRM7Q14831 915 aa13.91□□□□□ -0.18
VRK3-212ENST00000596814 SLC9A5Q14940 896 aa13.91□□□□□ -0.18
VRK3-212ENST00000596814 GARNL3Q5VVW2 1013 aa13.91□□□□□ -0.18
VRK3-212ENST00000596814 BLOC1S3Q6QNY0 202 aa13.91□□□□□ -0.18
VRK3-212ENST00000596814 IKBIPQ70UQ0 350 aa13.91□□□□□ -0.18
VRK3-212ENST00000596814 YTHDF3Q7Z739 585 aaKnown RBP13.91□□□□□ -0.18
VRK3-212ENST00000596814 B3GNT8Q7Z7M8 397 aa13.91□□□□□ -0.18
VRK3-212ENST00000596814 OR1L3Q8NH93 324 aa13.91□□□□□ -0.18
VRK3-212ENST00000596814 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.91□□□□□ -0.18
VRK3-212ENST00000596814 ZNF501Q96CX3 271 aaPredicted RBP13.91□□□□□ -0.18
VRK3-212ENST00000596814 SPDL1Q96EA4 605 aa13.91□□□□□ -0.18
VRK3-212ENST00000596814 C10orf90Q96M02 699 aa13.91□□□□□ -0.18
VRK3-212ENST00000596814 SERINC2Q96SA4 455 aa13.91□□□□□ -0.18
VRK3-212ENST00000596814 SLC25A23Q9BV35 468 aa13.91□□□□□ -0.18
VRK3-212ENST00000596814 SPRTNQ9H040 489 aaPredicted RBP13.91□□□□□ -0.18
VRK3-212ENST00000596814 FGF21Q9NSA1 209 aa13.91□□□□□ -0.18
VRK3-212ENST00000596814 PCDHGA1Q9Y5H4 931 aa13.91□□□□□ -0.18
VRK3-212ENST00000596814 HYKKA2RU49 373 aa13.9□□□□□ -0.18
VRK3-212ENST00000596814 H3BMH7 237 aa13.9□□□□□ -0.18
VRK3-212ENST00000596814 SCAMP2O15127 329 aaKnown RBP13.9□□□□□ -0.18
VRK3-212ENST00000596814 B3GALT2O43825 422 aa13.9□□□□□ -0.18
VRK3-212ENST00000596814 UNC5CO95185 931 aa13.9□□□□□ -0.18
VRK3-212ENST00000596814 IL3P08700 152 aa13.9□□□□□ -0.18
VRK3-212ENST00000596814 FAM58BPP0C7Q3 252 aa13.9□□□□□ -0.18
VRK3-212ENST00000596814 T-ENOLP0DO92 83 aa13.9□□□□□ -0.18
VRK3-212ENST00000596814 ZFP36L2P47974 494 aaKnown RBP13.9□□□□□ -0.18
VRK3-212ENST00000596814 CPA2P48052 419 aa13.9□□□□□ -0.18
VRK3-212ENST00000596814 PDX1P52945 283 aa13.9□□□□□ -0.18
VRK3-212ENST00000596814 KLC1Q07866 573 aa13.9□□□□□ -0.18
VRK3-212ENST00000596814 SPRED3Q2MJR0 410 aa13.9□□□□□ -0.18
VRK3-212ENST00000596814 FAM71E1Q6IPT2 247 aa13.9□□□□□ -0.18
VRK3-212ENST00000596814 RIMKLAQ8IXN7 391 aa13.9□□□□□ -0.18
VRK3-212ENST00000596814 GPR135Q8IZ08 494 aa13.9□□□□□ -0.18
VRK3-212ENST00000596814 TSPEARQ8WU66 669 aa13.9□□□□□ -0.18
VRK3-212ENST00000596814 TESCQ96BS2 214 aa13.9□□□□□ -0.18
VRK3-212ENST00000596814 ANKHQ9HCJ1 492 aa13.9□□□□□ -0.18
VRK3-212ENST00000596814 ENAMQ9NRM1 1142 aa13.9□□□□□ -0.18
VRK3-212ENST00000596814 LYARQ9NX58 379 aaKnown RBP13.9□□□□□ -0.18
VRK3-212ENST00000596814 WBP11Q9Y2W2 641 aaKnown RBP13.9□□□□□ -0.18
VRK3-212ENST00000596814 CCDC154A6NI56 674 aa13.9□□□□□ -0.18
VRK3-212ENST00000596814 GALR3O60755 368 aaPredicted RBP13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms