RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 CUL3Q13618 768 aa24.34■■□□□ 1.49
TRIM28-204ENST00000594806 KHDRBS2Q5VWX1 349 aaKnown RBP24.34■■□□□ 1.49
TRIM28-204ENST00000594806 LIPMQ5VYY2 423 aa24.34■■□□□ 1.49
TRIM28-204ENST00000594806 TTC19Q6DKK2 380 aaPredicted RBP24.34■■□□□ 1.49
TRIM28-204ENST00000594806 SHISA6Q6ZSJ9 500 aa24.34■■□□□ 1.49
TRIM28-204ENST00000594806 LAPTM4BQ86VI4 370 aa24.34■■□□□ 1.49
TRIM28-204ENST00000594806 TBC1D20Q96BZ9 403 aa24.34■■□□□ 1.49
TRIM28-204ENST00000594806 QRFPRQ96P65 431 aa24.34■■□□□ 1.49
TRIM28-204ENST00000594806 F2RL3Q96RI0 385 aa24.34■■□□□ 1.49
TRIM28-204ENST00000594806 COPS7BQ9H9Q2 264 aaPredicted RBP24.34■■□□□ 1.49
TRIM28-204ENST00000594806 P4HTMQ9NXG6 502 aa24.34■■□□□ 1.49
TRIM28-204ENST00000594806 SNX6Q9UNH7 406 aa24.34■■□□□ 1.49
TRIM28-204ENST00000594806 ITPR1Q14643 2758 aa24.34■■□□□ 1.49
TRIM28-204ENST00000594806 NUP210LQ5VU65 1888 aa24.34■■□□□ 1.49
TRIM28-204ENST00000594806 ZNF860A6NHJ4 632 aa24.33■■□□□ 1.49
TRIM28-204ENST00000594806 FFAR3O14843 346 aa24.33■■□□□ 1.49
TRIM28-204ENST00000594806 GPR42O15529 346 aa24.33■■□□□ 1.49
TRIM28-204ENST00000594806 TGFB1P01137 390 aa24.33■■□□□ 1.49
TRIM28-204ENST00000594806 RNH1P13489 461 aaKnown RBP24.33■■□□□ 1.49
TRIM28-204ENST00000594806 ATP1A4Q13733 1029 aa24.33■■□□□ 1.49
TRIM28-204ENST00000594806 DDX39BQ13838 428 aaKnown RBP24.33■■□□□ 1.49
TRIM28-204ENST00000594806 RCN2Q14257 317 aa24.33■■□□□ 1.49
TRIM28-204ENST00000594806 TUBB8Q3ZCM7 444 aa24.33■■□□□ 1.49
TRIM28-204ENST00000594806 CFAP157Q5JU67 520 aa24.33■■□□□ 1.49
TRIM28-204ENST00000594806 GPRIN3Q6ZVF9 776 aa24.33■■□□□ 1.49
TRIM28-204ENST00000594806 RPS27LQ71UM5 84 aaKnown RBP24.33■■□□□ 1.49
TRIM28-204ENST00000594806 HOMEZQ8IX15 550 aa24.33■■□□□ 1.49
TRIM28-204ENST00000594806 PRSS58Q8IYP2 241 aa24.33■■□□□ 1.49
TRIM28-204ENST00000594806 ARMC2Q8NEN0 867 aa24.33■■□□□ 1.49
TRIM28-204ENST00000594806 TCP10LQ8TDR4 215 aa24.33■■□□□ 1.49
TRIM28-204ENST00000594806 RGMAQ96B86 450 aa24.33■■□□□ 1.49
TRIM28-204ENST00000594806 PEX11GQ96HA9 241 aa24.33■■□□□ 1.49
TRIM28-204ENST00000594806 MTERF1Q99551 399 aaKnown RBP24.33■■□□□ 1.49
TRIM28-204ENST00000594806 ING2Q9H160 280 aa24.33■■□□□ 1.49
TRIM28-204ENST00000594806 PRDM7Q9NQW5 492 aa24.33■■□□□ 1.49
TRIM28-204ENST00000594806 ARGLU1Q9NWB6 273 aaPredicted RBP24.33■■□□□ 1.49
TRIM28-204ENST00000594806 MKL2Q9ULH7 1088 aa24.33■■□□□ 1.49
TRIM28-204ENST00000594806 HS3ST3B1Q9Y662 390 aa24.33■■□□□ 1.49
TRIM28-204ENST00000594806 MED13Q9UHV7 2174 aa24.32■■□□□ 1.48
TRIM28-204ENST00000594806 C4orf51C9J302 202 aa24.32■■□□□ 1.48
TRIM28-204ENST00000594806 PSMD12O00232 456 aaPredicted RBP24.32■■□□□ 1.48
TRIM28-204ENST00000594806 TYROBPO43914 113 aa24.32■■□□□ 1.48
TRIM28-204ENST00000594806 TRIM13O60858 407 aa24.32■■□□□ 1.48
TRIM28-204ENST00000594806 SPAG7O75391 227 aa24.32■■□□□ 1.48
TRIM28-204ENST00000594806 ENO1P06733 434 aaKnown RBP24.32■■□□□ 1.48
TRIM28-204ENST00000594806 FHP07954 510 aa24.32■■□□□ 1.48
TRIM28-204ENST00000594806 NAGLUP54802 743 aa24.32■■□□□ 1.48
TRIM28-204ENST00000594806 POLE2P56282 527 aa24.32■■□□□ 1.48
TRIM28-204ENST00000594806 FOXL2P58012 376 aa24.32■■□□□ 1.48
TRIM28-204ENST00000594806 ZNF33BQ06732 778 aa24.32■■□□□ 1.48
TRIM28-204ENST00000594806 AP5B1Q2VPB7 878 aa24.32■■□□□ 1.48
TRIM28-204ENST00000594806 LETMD1Q6P1Q0 360 aa24.32■■□□□ 1.48
TRIM28-204ENST00000594806 CCNYL1Q8N7R7 359 aa24.32■■□□□ 1.48
TRIM28-204ENST00000594806 OR5T3Q8NGG3 340 aa24.32■■□□□ 1.48
TRIM28-204ENST00000594806 METTL21AQ8WXB1 218 aa24.32■■□□□ 1.48
TRIM28-204ENST00000594806 FAM111AQ96PZ2 611 aa24.32■■□□□ 1.48
TRIM28-204ENST00000594806 SERPINI1Q99574 410 aa24.32■■□□□ 1.48
TRIM28-204ENST00000594806 SLC29A3Q9BZD2 475 aa24.32■■□□□ 1.48
TRIM28-204ENST00000594806 C12orf65Q9H3J6 166 aaKnown RBP24.32■■□□□ 1.48
TRIM28-204ENST00000594806 CENPHQ9H3R5 247 aa24.32■■□□□ 1.48
TRIM28-204ENST00000594806 GSTO2Q9H4Y5 243 aa24.32■■□□□ 1.48
TRIM28-204ENST00000594806 ELOVL6Q9H5J4 265 aa24.32■■□□□ 1.48
TRIM28-204ENST00000594806 ACSS2Q9NR19 701 aa24.32■■□□□ 1.48
TRIM28-204ENST00000594806 LOC400499M0QZD8 3231 aa24.31■■□□□ 1.48
TRIM28-204ENST00000594806 A0A1W2PQ72 361 aa24.31■■□□□ 1.48
TRIM28-204ENST00000594806 ARGFXA6NJG6 315 aa24.31■■□□□ 1.48
TRIM28-204ENST00000594806 MAGEB17A8MXT2 336 aa24.31■■□□□ 1.48
TRIM28-204ENST00000594806 PPP6CO00743 305 aa24.31■■□□□ 1.48
TRIM28-204ENST00000594806 SOCS6O14544 535 aa24.31■■□□□ 1.48
TRIM28-204ENST00000594806 ALOX12BO75342 701 aa24.31■■□□□ 1.48
TRIM28-204ENST00000594806 SEMA3DO95025 777 aa24.31■■□□□ 1.48
TRIM28-204ENST00000594806 SCELO95171 688 aa24.31■■□□□ 1.48
TRIM28-204ENST00000594806 ESRRBO95718 433 aa24.31■■□□□ 1.48
TRIM28-204ENST00000594806 B3GALT4O96024 378 aa24.31■■□□□ 1.48
TRIM28-204ENST00000594806 TSPAN8P19075 237 aa24.31■■□□□ 1.48
TRIM28-204ENST00000594806 RAP1GDS1P52306 607 aa24.31■■□□□ 1.48
TRIM28-204ENST00000594806 RPS13P62277 151 aaKnown RBP24.31■■□□□ 1.48
TRIM28-204ENST00000594806 TMEM205Q6UW68 189 aa24.31■■□□□ 1.48
TRIM28-204ENST00000594806 KIRREL2Q6UWL6 708 aa24.31■■□□□ 1.48
TRIM28-204ENST00000594806 FRMD7Q6ZUT3 714 aa24.31■■□□□ 1.48
TRIM28-204ENST00000594806 EXOC3L1Q86VI1 746 aa24.31■■□□□ 1.48
TRIM28-204ENST00000594806 CA13Q8N1Q1 262 aa24.31■■□□□ 1.48
TRIM28-204ENST00000594806 PLPP5Q8NEB5 264 aa24.31■■□□□ 1.48
TRIM28-204ENST00000594806 SREK1Q8WXA9 508 aaKnown RBP24.31■■□□□ 1.48
TRIM28-204ENST00000594806 VN1R1Q9GZP7 353 aa24.31■■□□□ 1.48
TRIM28-204ENST00000594806 OR51B5Q9H339 312 aa24.31■■□□□ 1.48
TRIM28-204ENST00000594806 BRF2Q9HAW0 419 aa24.31■■□□□ 1.48
TRIM28-204ENST00000594806 C19orf25Q9UFG5 118 aaPredicted RBP24.31■■□□□ 1.48
TRIM28-204ENST00000594806 ZNF225Q9UK10 706 aa24.31■■□□□ 1.48
TRIM28-204ENST00000594806 GOLGA6L10A6NI86 522 aa24.3■■□□□ 1.48
TRIM28-204ENST00000594806 OR4F21O95013 312 aa24.3■■□□□ 1.48
TRIM28-204ENST00000594806 KRT6AP02538 564 aa24.3■■□□□ 1.48
TRIM28-204ENST00000594806 KRT6BP04259 564 aa24.3■■□□□ 1.48
TRIM28-204ENST00000594806 ACPPP15309 386 aa24.3■■□□□ 1.48
TRIM28-204ENST00000594806 KRT6CP48668 564 aa24.3■■□□□ 1.48
TRIM28-204ENST00000594806 OLR1P78380 273 aa24.3■■□□□ 1.48
TRIM28-204ENST00000594806 PCLAFQ15004 111 aa24.3■■□□□ 1.48
TRIM28-204ENST00000594806 MINDY4Q4G0A6 757 aa24.3■■□□□ 1.48
TRIM28-204ENST00000594806 DCAF10Q5QP82 559 aa24.3■■□□□ 1.48
TRIM28-204ENST00000594806 MFSD4BQ5TF39 518 aa24.3■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms