RNA–Protein interactions for RNA: ENST00000578995.5

SMARCE1-215, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 2

Gene SMARCE1, Length 534 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-215ENST00000578995 FOXA1P55317 472 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 DNAJB13P59910 316 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 ERVPABLB-1P60509 514 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 ARF3P61204 181 aaPredicted RBP3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 HERVK_113P63132 956 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 GABREP78334 506 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 MEF2AQ02078 507 aaPredicted RBP3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 GPS2Q13227 327 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 SRSF6Q13247 344 aaKnown RBP3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 TUBB3Q13509 450 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 COL9A2Q14055 689 aaPredicted RBP3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 DOC2AQ14183 400 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 KRT33BQ14525 404 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 IL11RAQ14626 422 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 SF1Q15637 639 aaKnown RBP3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 PDK4Q16654 411 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 PFKFB4Q16877 469 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 HKDC1Q2TB90 917 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 TBC1D25Q3MII6 688 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 UGT3A2Q3SY77 523 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 LARP7Q4G0J3 582 aaKnown RBP eCLIP3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 GGTA1PQ4G0N0 100 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 SNAP47Q5SQN1 464 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 LGSNQ5TDP6 509 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 AGBL2Q5U5Z8 902 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 GRHL2Q6ISB3 625 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 CAPN13Q6MZZ7 669 aaPredicted RBP3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 LETMD1Q6P1Q0 360 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 TTC23LQ6PF05 361 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 NXPE4Q6UWF7 544 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 FAM198BQ6UWH4 519 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 RNF165Q6ZSG1 346 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 FRMD7Q6ZUT3 714 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 MED25Q71SY5 747 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 PRSS41Q7RTY9 318 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 TMPRSS11BQ86T26 416 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 SYVN1Q86TM6 617 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 PDSS2Q86YH6 399 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 MCATQ8IVS2 390 aaKnown RBP3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 C10orf107Q8IVU9 208 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 SULF2Q8IWU5 870 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 FBXO39Q8N4B4 442 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 RNF175Q8N4F7 328 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 AMER3Q8N944 861 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 MFSD9Q8NBP5 474 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 MDM1Q8TC05 714 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 RDH11Q8TC12 318 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 NT5CQ8TCD5 201 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 AGAP11Q8TF27 550 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 ZNF473Q8WTR7 871 aaKnown RBP3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 ATL1Q8WXF7 558 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 USP7Q93009 1102 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 EXT2Q93063 718 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 SLC22A18Q96BI1 424 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 RNF31Q96EP0 1072 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 MED8Q96G25 268 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 TCTN2Q96GX1 697 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 AHCYL2Q96HN2 611 aaKnown RBP3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 TSNARE1Q96NA8 513 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 C8orf49Q96NF6 230 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 LRFN5Q96NI6 719 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 PRAP1Q96NZ9 151 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 QRFPRQ96P65 431 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 GBP5Q96PP8 586 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 FAM111AQ96PZ2 611 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 OR6C1Q96RD1 312 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 RUFY1Q96T51 708 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 CTRCQ99895 268 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 ZFYVE21Q9BQ24 234 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 CCDC77Q9BR77 488 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 HAUS8Q9BT25 410 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 MECRQ9BV79 373 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 NTMT1Q9BV86 223 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 GATA5Q9BWX5 397 aaPredicted RBP3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 ERVK-6Q9BXR3 956 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 MS4A8Q9BY19 250 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 SPRTNQ9H040 489 aaPredicted RBP3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 PCBD2Q9H0N5 130 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 RHBGQ9H310 441 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 SYNDIG1Q9H7V2 258 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 MRPS30Q9NP92 439 aaKnown RBP3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 TMEM184CQ9NVA4 438 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 DNAJC11Q9NVH1 559 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 OXSMQ9NWU1 459 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 WWOXQ9NZC7 414 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 CD274Q9NZQ7 290 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 SENP1Q9P0U3 644 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 C11orf21Q9P2W6 132 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 PISDQ9UG56 409 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 DCDC2Q9UHG0 476 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 DUSP13Q9UII6 198 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 LNPEPQ9UIQ6 1025 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 HAO1Q9UJM8 370 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 TLK1Q9UKI8 766 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 TMCO1Q9UM00 188 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 PPT2Q9UMR5 302 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 PLCL2Q9UPR0 1127 aa3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 RUVBL1Q9Y265 456 aaKnown RBP3.6□□□□□ -1.83
SMARCE1-215ENST00000578995 RNF11Q9Y3C5 154 aa3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms