RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 RNASE8Q8TDE3 154 aaKnown RBP4.05□□□□□ -1.76
LINC00560-201ENST00000564593 ULK4Q96C45 1275 aa4.05□□□□□ -1.76
LINC00560-201ENST00000564593 BPIFA2Q96DR5 249 aa4.05□□□□□ -1.76
LINC00560-201ENST00000564593 FAM218AQ96MZ4 157 aa4.05□□□□□ -1.76
LINC00560-201ENST00000564593 PCDHB18PQ96TA0 734 aa4.05□□□□□ -1.76
LINC00560-201ENST00000564593 ATP6V0BQ99437 205 aa4.05□□□□□ -1.76
LINC00560-201ENST00000564593 UBAC1Q9BSL1 405 aa4.05□□□□□ -1.76
LINC00560-201ENST00000564593 BARHL1Q9BZE3 327 aa4.05□□□□□ -1.76
LINC00560-201ENST00000564593 C3orf14Q9HBI5 128 aa4.05□□□□□ -1.76
LINC00560-201ENST00000564593 AKAP7Q9P0M2 348 aaPredicted RBP4.05□□□□□ -1.76
LINC00560-201ENST00000564593 CACNG5Q9UF02 275 aa4.05□□□□□ -1.76
LINC00560-201ENST00000564593 PLCL2Q9UPR0 1127 aa4.05□□□□□ -1.76
LINC00560-201ENST00000564593 CFTRP13569 1480 aa4.04□□□□□ -1.76
LINC00560-201ENST00000564593 CLSPNQ9HAW4 1339 aa4.04□□□□□ -1.76
LINC00560-201ENST00000564593 CUL7Q14999 1698 aa4.04□□□□□ -1.76
LINC00560-201ENST00000564593 CC2D2AQ9P2K1 1620 aa4.04□□□□□ -1.76
LINC00560-201ENST00000564593 NKX6-3A6NJ46 265 aa4.04□□□□□ -1.76
LINC00560-201ENST00000564593 SURF4O15260 269 aa4.04□□□□□ -1.76
LINC00560-201ENST00000564593 EDIL3O43854 480 aa4.04□□□□□ -1.76
LINC00560-201ENST00000564593 MT-ND3P03897 115 aa4.04□□□□□ -1.76
LINC00560-201ENST00000564593 MMP12P39900 470 aa4.04□□□□□ -1.76
LINC00560-201ENST00000564593 CRIP2P52943 208 aaPredicted RBP4.04□□□□□ -1.76
LINC00560-201ENST00000564593 MTF1Q14872 753 aa4.04□□□□□ -1.76
LINC00560-201ENST00000564593 HFEQ30201 348 aa4.04□□□□□ -1.76
LINC00560-201ENST00000564593 SERPINA12Q8IW75 414 aa4.04□□□□□ -1.76
LINC00560-201ENST00000564593 PEX5LQ8IYB4 626 aa4.04□□□□□ -1.76
LINC00560-201ENST00000564593 ARL10Q8N8L6 244 aa4.04□□□□□ -1.76
LINC00560-201ENST00000564593 HCAR2Q8TDS4 363 aa4.04□□□□□ -1.76
LINC00560-201ENST00000564593 CHURC1Q8WUH1 139 aa4.04□□□□□ -1.76
LINC00560-201ENST00000564593 GAL3ST4Q96RP7 486 aa4.04□□□□□ -1.76
LINC00560-201ENST00000564593 DDX50Q9BQ39 737 aaKnown RBP4.04□□□□□ -1.76
LINC00560-201ENST00000564593 SYT15Q9BQS2 421 aa4.04□□□□□ -1.76
LINC00560-201ENST00000564593 LRRC2Q9BYS8 371 aa4.04□□□□□ -1.76
LINC00560-201ENST00000564593 HOXD1Q9GZZ0 328 aa4.04□□□□□ -1.76
LINC00560-201ENST00000564593 SPHK2Q9NRA0 654 aa4.04□□□□□ -1.76
LINC00560-201ENST00000564593 MIS18AQ9NYP9 233 aa4.04□□□□□ -1.76
LINC00560-201ENST00000564593 TMEM181Q9P2C4 612 aa4.04□□□□□ -1.76
LINC00560-201ENST00000564593 KLHL8Q9P2G9 620 aaPredicted RBP4.04□□□□□ -1.76
LINC00560-201ENST00000564593 EXOC6BQ9Y2D4 811 aa4.04□□□□□ -1.76
LINC00560-201ENST00000564593 CSNK1G3Q9Y6M4 447 aa4.04□□□□□ -1.76
LINC00560-201ENST00000564593 NEDD4P46934 1319 aa4.04□□□□□ -1.76
LINC00560-201ENST00000564593 RNF123Q5XPI4 1314 aa4.04□□□□□ -1.76
LINC00560-201ENST00000564593 hCG_38984A0A1B0GV85 526 aa4.03□□□□□ -1.76
LINC00560-201ENST00000564593 TMEM129A0AVI4 362 aa4.03□□□□□ -1.76
LINC00560-201ENST00000564593 GTPBP10A4D1E9 387 aaKnown RBP4.03□□□□□ -1.76
LINC00560-201ENST00000564593 GLTPD2A6NH11 291 aa4.03□□□□□ -1.76
LINC00560-201ENST00000564593 ZNF821O75541 412 aaPredicted RBP4.03□□□□□ -1.76
LINC00560-201ENST00000564593 GJB2P29033 226 aa4.03□□□□□ -1.76
LINC00560-201ENST00000564593 CNTN1Q12860 1018 aa4.03□□□□□ -1.76
LINC00560-201ENST00000564593 CDC37Q16543 378 aaPredicted RBP4.03□□□□□ -1.76
LINC00560-201ENST00000564593 ZNF776Q68DI1 518 aaPredicted RBP4.03□□□□□ -1.76
LINC00560-201ENST00000564593 PLBD1Q6P4A8 553 aa4.03□□□□□ -1.76
LINC00560-201ENST00000564593 Q6ZRP5 223 aa4.03□□□□□ -1.76
LINC00560-201ENST00000564593 TOM1L2Q6ZVM7 507 aa4.03□□□□□ -1.76
LINC00560-201ENST00000564593 RFPL4BQ6ZWI9 263 aa4.03□□□□□ -1.76
LINC00560-201ENST00000564593 GPATCH11Q8N954 259 aa4.03□□□□□ -1.76
LINC00560-201ENST00000564593 ADAD2Q8NCV1 583 aaKnown RBP4.03□□□□□ -1.76
LINC00560-201ENST00000564593 OR13C5Q8NGS8 318 aa4.03□□□□□ -1.76
LINC00560-201ENST00000564593 OR2T6Q8NHC8 308 aa4.03□□□□□ -1.76
LINC00560-201ENST00000564593 CD99L2Q8TCZ2 262 aa4.03□□□□□ -1.76
LINC00560-201ENST00000564593 SLC35C1Q96A29 364 aa4.03□□□□□ -1.76
LINC00560-201ENST00000564593 LURAP1Q96LR2 239 aa4.03□□□□□ -1.76
LINC00560-201ENST00000564593 TXLNGQ9NUQ3 528 aa4.03□□□□□ -1.76
LINC00560-201ENST00000564593 CYP39A1Q9NYL5 469 aa4.03□□□□□ -1.76
LINC00560-201ENST00000564593 PSORS1C1Q9UIG5 152 aa4.03□□□□□ -1.76
LINC00560-201ENST00000564593 ETV7Q9Y603 341 aa4.03□□□□□ -1.76
LINC00560-201ENST00000564593 PRXQ9BXM0 1461 aa4.03□□□□□ -1.76
LINC00560-201ENST00000564593 MAP3K1Q13233 1512 aa4.03□□□□□ -1.76
LINC00560-201ENST00000564593 CTTNBP2Q8WZ74 1663 aa4.02□□□□□ -1.77
LINC00560-201ENST00000564593 TCP10L2B9ZVM9 353 aa4.02□□□□□ -1.77
LINC00560-201ENST00000564593 CHUKO15111 745 aa4.02□□□□□ -1.77
LINC00560-201ENST00000564593 SYT7O43581 403 aa4.02□□□□□ -1.77
LINC00560-201ENST00000564593 VEGFDO43915 354 aa4.02□□□□□ -1.77
LINC00560-201ENST00000564593 LRCH4O75427 683 aa4.02□□□□□ -1.77
LINC00560-201ENST00000564593 ODC1P11926 461 aa4.02□□□□□ -1.77
LINC00560-201ENST00000564593 SKILP12757 684 aa4.02□□□□□ -1.77
LINC00560-201ENST00000564593 FERP16591 822 aa4.02□□□□□ -1.77
LINC00560-201ENST00000564593 STMN1P16949 149 aa4.02□□□□□ -1.77
LINC00560-201ENST00000564593 GIFP27352 417 aa4.02□□□□□ -1.77
LINC00560-201ENST00000564593 FEN1P39748 380 aaKnown RBP4.02□□□□□ -1.77
LINC00560-201ENST00000564593 DRP2Q13474 957 aa4.02□□□□□ -1.77
LINC00560-201ENST00000564593 GPR50Q13585 617 aa4.02□□□□□ -1.77
LINC00560-201ENST00000564593 SPANXN4Q5MJ08 99 aa4.02□□□□□ -1.77
LINC00560-201ENST00000564593 LYPLAL1Q5VWZ2 237 aa4.02□□□□□ -1.77
LINC00560-201ENST00000564593 CES4AQ5XG92 561 aa4.02□□□□□ -1.77
LINC00560-201ENST00000564593 SLC22A15Q8IZD6 547 aa4.02□□□□□ -1.77
LINC00560-201ENST00000564593 SLC43A2Q8N370 569 aa4.02□□□□□ -1.77
LINC00560-201ENST00000564593 SPATA3Q8NHX4 192 aa4.02□□□□□ -1.77
LINC00560-201ENST00000564593 SPATA18Q8TC71 538 aa4.02□□□□□ -1.77
LINC00560-201ENST00000564593 HAS2Q92819 552 aa4.02□□□□□ -1.77
LINC00560-201ENST00000564593 ZNF274Q96GC6 653 aaPredicted RBP4.02□□□□□ -1.77
LINC00560-201ENST00000564593 ART5Q96L15 291 aa4.02□□□□□ -1.77
LINC00560-201ENST00000564593 ZNF300Q96RE9 604 aaPredicted RBP4.02□□□□□ -1.77
LINC00560-201ENST00000564593 USP28Q96RU2 1077 aa4.02□□□□□ -1.77
LINC00560-201ENST00000564593 KRT12Q99456 494 aa4.02□□□□□ -1.77
LINC00560-201ENST00000564593 CCM2Q9BSQ5 444 aa4.02□□□□□ -1.77
LINC00560-201ENST00000564593 TSPYL1Q9H0U9 437 aa4.02□□□□□ -1.77
LINC00560-201ENST00000564593 THAP9Q9H5L6 903 aa4.02□□□□□ -1.77
LINC00560-201ENST00000564593 ZDHHC6Q9H6R6 413 aa4.02□□□□□ -1.77
LINC00560-201ENST00000564593 MTHFD2LQ9H903 347 aaPredicted RBP4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms