RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 KLHL31Q9H511 634 aa12.63□□□□□ -0.39
CLK3-216ENST00000564468 COPS7BQ9H9Q2 264 aaPredicted RBP12.63□□□□□ -0.39
CLK3-216ENST00000564468 PSMC3IPQ9P2W1 217 aaPredicted RBP12.63□□□□□ -0.39
CLK3-216ENST00000564468 ASB1Q9Y576 335 aa12.63□□□□□ -0.39
CLK3-216ENST00000564468 PCDHGA11Q9Y5H2 935 aa12.63□□□□□ -0.39
CLK3-216ENST00000564468 MYO9AB2RTY4 2548 aa12.62□□□□□ -0.39
CLK3-216ENST00000564468 SYNDIG1LA6NDD5 238 aa12.62□□□□□ -0.39
CLK3-216ENST00000564468 STX16-NPEPL1H3BU86 382 aa12.62□□□□□ -0.39
CLK3-216ENST00000564468 STX16O14662 325 aa12.62□□□□□ -0.39
CLK3-216ENST00000564468 PRAMEF4O60810 478 aa12.62□□□□□ -0.39
CLK3-216ENST00000564468 PRR35P0CG20 571 aa12.62□□□□□ -0.39
CLK3-216ENST00000564468 CD22P20273 847 aa12.62□□□□□ -0.39
CLK3-216ENST00000564468 PHEXP78562 749 aa12.62□□□□□ -0.39
CLK3-216ENST00000564468 ACTN3Q08043 901 aaPredicted RBP12.62□□□□□ -0.39
CLK3-216ENST00000564468 GTF2H2Q13888 395 aa12.62□□□□□ -0.39
CLK3-216ENST00000564468 PCOLCEQ15113 449 aa12.62□□□□□ -0.39
CLK3-216ENST00000564468 NSDHLQ15738 373 aa12.62□□□□□ -0.39
CLK3-216ENST00000564468 TMEM35AQ53FP2 167 aa12.62□□□□□ -0.39
CLK3-216ENST00000564468 CRB2Q5IJ48 1285 aa12.62□□□□□ -0.39
CLK3-216ENST00000564468 PRAMEF9Q5VWM5 478 aa12.62□□□□□ -0.39
CLK3-216ENST00000564468 GTF2H2CQ6P1K8 395 aa12.62□□□□□ -0.39
CLK3-216ENST00000564468 ISLR2Q6UXK2 745 aa12.62□□□□□ -0.39
CLK3-216ENST00000564468 QSOX2Q6ZRP7 698 aa12.62□□□□□ -0.39
CLK3-216ENST00000564468 RBMXL3Q8N7X1 1067 aaKnown RBP12.62□□□□□ -0.39
CLK3-216ENST00000564468 PTGR2Q8N8N7 351 aaPredicted RBP12.62□□□□□ -0.39
CLK3-216ENST00000564468 UBLCP1Q8WVY7 318 aaPredicted RBP12.62□□□□□ -0.39
CLK3-216ENST00000564468 ATP6V1E2Q96A05 226 aa12.62□□□□□ -0.39
CLK3-216ENST00000564468 KCNC2Q96PR1 638 aa12.62□□□□□ -0.39
CLK3-216ENST00000564468 SERINC2Q96SA4 455 aa12.62□□□□□ -0.39
CLK3-216ENST00000564468 IPPKQ9H8X2 491 aa12.62□□□□□ -0.39
CLK3-216ENST00000564468 ACTR8Q9H981 624 aa12.62□□□□□ -0.39
CLK3-216ENST00000564468 SLAMF7Q9NQ25 335 aa12.62□□□□□ -0.39
CLK3-216ENST00000564468 LANCL2Q9NS86 450 aa12.62□□□□□ -0.39
CLK3-216ENST00000564468 ZNF358Q9NW07 568 aa12.62□□□□□ -0.39
CLK3-216ENST00000564468 XPR1Q9UBH6 696 aa12.62□□□□□ -0.39
CLK3-216ENST00000564468 MRPS33Q9Y291 106 aaKnown RBP12.62□□□□□ -0.39
CLK3-216ENST00000564468 TSC22D4Q9Y3Q8 395 aa12.62□□□□□ -0.39
CLK3-216ENST00000564468 RELNP78509 3460 aa12.62□□□□□ -0.39
CLK3-216ENST00000564468 USP9YO00507 2555 aaPredicted RBP12.61□□□□□ -0.39
CLK3-216ENST00000564468 TTLL8A6PVC2 850 aa12.61□□□□□ -0.39
CLK3-216ENST00000564468 MASP2O00187 686 aa12.61□□□□□ -0.39
CLK3-216ENST00000564468 CLDN4O14493 209 aa12.61□□□□□ -0.39
CLK3-216ENST00000564468 PRMT3O60678 531 aa12.61□□□□□ -0.39
CLK3-216ENST00000564468 CDC123O75794 336 aaPredicted RBP12.61□□□□□ -0.39
CLK3-216ENST00000564468 B3GALT4O96024 378 aa12.61□□□□□ -0.39
CLK3-216ENST00000564468 GSTA1P08263 222 aa12.61□□□□□ -0.39
CLK3-216ENST00000564468 PCNAP12004 261 aa12.61□□□□□ -0.39
CLK3-216ENST00000564468 TAC1P20366 129 aa12.61□□□□□ -0.39
CLK3-216ENST00000564468 GCAP28676 217 aa12.61□□□□□ -0.39
CLK3-216ENST00000564468 EEF1DP29692 281 aaKnown RBP12.61□□□□□ -0.39
CLK3-216ENST00000564468 HNRNPH1P31943 449 aaKnown RBP12.61□□□□□ -0.39
CLK3-216ENST00000564468 PIK3CBP42338 1070 aa12.61□□□□□ -0.39
CLK3-216ENST00000564468 PLA2G16P53816 162 aa12.61□□□□□ -0.39
CLK3-216ENST00000564468 MTTPP55157 894 aa12.61□□□□□ -0.39
CLK3-216ENST00000564468 OLR1P78380 273 aa12.61□□□□□ -0.39
CLK3-216ENST00000564468 RHAGQ02094 409 aa12.61□□□□□ -0.39
CLK3-216ENST00000564468 Q0VFX4 171 aa12.61□□□□□ -0.39
CLK3-216ENST00000564468 ABRAXAS2Q15018 415 aa12.61□□□□□ -0.39
CLK3-216ENST00000564468 EXT1Q16394 746 aa12.61□□□□□ -0.39
CLK3-216ENST00000564468 NADK2Q4G0N4 442 aa12.61□□□□□ -0.39
CLK3-216ENST00000564468 ABHD17CQ6PCB6 329 aa12.61□□□□□ -0.39
CLK3-216ENST00000564468 IGFL2Q6UWQ7 119 aa12.61□□□□□ -0.39
CLK3-216ENST00000564468 GOLGA7Q7Z5G4 137 aa12.61□□□□□ -0.39
CLK3-216ENST00000564468 ANKRD37Q7Z713 158 aa12.61□□□□□ -0.39
CLK3-216ENST00000564468 MYLK4Q86YV6 388 aaPredicted RBP12.61□□□□□ -0.39
CLK3-216ENST00000564468 GSPT2Q8IYD1 628 aaKnown RBP12.61□□□□□ -0.39
CLK3-216ENST00000564468 CA13Q8N1Q1 262 aa12.61□□□□□ -0.39
CLK3-216ENST00000564468 EFCAB3Q8N7B9 438 aa12.61□□□□□ -0.39
CLK3-216ENST00000564468 C7orf57Q8NEG2 295 aa12.61□□□□□ -0.39
CLK3-216ENST00000564468 OR7G3Q8NG95 312 aa12.61□□□□□ -0.39
CLK3-216ENST00000564468 PPP4R1Q8TF05 950 aa12.61□□□□□ -0.39
CLK3-216ENST00000564468 ZNF473Q8WTR7 871 aaKnown RBP12.61□□□□□ -0.39
CLK3-216ENST00000564468 PHF21BQ96EK2 531 aa12.61□□□□□ -0.39
CLK3-216ENST00000564468 CMTM7Q96FZ5 175 aa12.61□□□□□ -0.39
CLK3-216ENST00000564468 IMMP1LQ96LU5 166 aa12.61□□□□□ -0.39
CLK3-216ENST00000564468 MAGEB10Q96LZ2 347 aaPredicted RBP12.61□□□□□ -0.39
CLK3-216ENST00000564468 PTCHD1Q96NR3 888 aa12.61□□□□□ -0.39
CLK3-216ENST00000564468 LPAR4Q99677 370 aa12.61□□□□□ -0.39
CLK3-216ENST00000564468 TBCDQ9BTW9 1192 aa12.61□□□□□ -0.39
CLK3-216ENST00000564468 MS4A8Q9BY19 250 aa12.61□□□□□ -0.39
CLK3-216ENST00000564468 RBCK1Q9BYM8 510 aa12.61□□□□□ -0.39
CLK3-216ENST00000564468 PRDM9Q9NQV7 894 aa12.61□□□□□ -0.39
CLK3-216ENST00000564468 TEKT2Q9UIF3 430 aa12.61□□□□□ -0.39
CLK3-216ENST00000564468 B3GNT3Q9Y2A9 372 aa12.61□□□□□ -0.39
CLK3-216ENST00000564468 MMACHCQ9Y4U1 282 aa12.61□□□□□ -0.39
CLK3-216ENST00000564468 SPACA6W5XKT8 324 aa12.61□□□□□ -0.39
CLK3-216ENST00000564468 H0YIV9 168 aa12.6□□□□□ -0.39
CLK3-216ENST00000564468 E2F3O00716 465 aa12.6□□□□□ -0.39
CLK3-216ENST00000564468 B4GALT2O60909 372 aa12.6□□□□□ -0.39
CLK3-216ENST00000564468 SLU7O95391 586 aaKnown RBP12.6□□□□□ -0.39
CLK3-216ENST00000564468 CLDN9O95484 217 aa12.6□□□□□ -0.39
CLK3-216ENST00000564468 ARL1P40616 181 aaPredicted RBP12.6□□□□□ -0.39
CLK3-216ENST00000564468 TSFMP43897 325 aaKnown RBP12.6□□□□□ -0.39
CLK3-216ENST00000564468 CCNG1P51959 295 aa12.6□□□□□ -0.39
CLK3-216ENST00000564468 ARFIP1P53367 373 aa12.6□□□□□ -0.39
CLK3-216ENST00000564468 RAB38P57729 211 aa12.6□□□□□ -0.39
CLK3-216ENST00000564468 OR4D2P58180 307 aa12.6□□□□□ -0.39
CLK3-216ENST00000564468 MFAP5Q13361 173 aa12.6□□□□□ -0.39
CLK3-216ENST00000564468 ESPL1Q14674 2120 aa12.6□□□□□ -0.39
CLK3-216ENST00000564468 AP5B1Q2VPB7 878 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms