RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 POU4F3Q15319 338 aa6.8□□□□□ -1.32
VPS4A-203ENST00000564399 ZNF750Q32MQ0 723 aa6.8□□□□□ -1.32
VPS4A-203ENST00000564399 TTLL9Q3SXZ7 439 aa6.8□□□□□ -1.32
VPS4A-203ENST00000564399 PCID2Q5JVF3 399 aa6.8□□□□□ -1.32
VPS4A-203ENST00000564399 Q5PR19 223 aa6.8□□□□□ -1.32
VPS4A-203ENST00000564399 HECTD2Q5U5R9 776 aa6.8□□□□□ -1.32
VPS4A-203ENST00000564399 MRNIPQ6NTE8 343 aa6.8□□□□□ -1.32
VPS4A-203ENST00000564399 C16orf47Q6ZP98 133 aaPredicted RBP6.8□□□□□ -1.32
VPS4A-203ENST00000564399 QSOX2Q6ZRP7 698 aa6.8□□□□□ -1.32
VPS4A-203ENST00000564399 KIAA0408Q6ZU52 694 aa6.8□□□□□ -1.32
VPS4A-203ENST00000564399 C17orf64Q86WR6 236 aa6.8□□□□□ -1.32
VPS4A-203ENST00000564399 KIF18BQ86Y91 864 aa6.8□□□□□ -1.32
VPS4A-203ENST00000564399 SLC13A5Q86YT5 568 aaPredicted RBP6.8□□□□□ -1.32
VPS4A-203ENST00000564399 KRTAP1-3Q8IUG1 177 aa6.8□□□□□ -1.32
VPS4A-203ENST00000564399 LRRC56Q8IYG6 542 aaPredicted RBP6.8□□□□□ -1.32
VPS4A-203ENST00000564399 CIARTQ8N365 385 aaPredicted RBP6.8□□□□□ -1.32
VPS4A-203ENST00000564399 FAM109AQ8N4B1 249 aa6.8□□□□□ -1.32
VPS4A-203ENST00000564399 TMEM251Q8N6I4 163 aa6.8□□□□□ -1.32
VPS4A-203ENST00000564399 MFSD9Q8NBP5 474 aa6.8□□□□□ -1.32
VPS4A-203ENST00000564399 RELL2Q8NC24 303 aaPredicted RBP6.8□□□□□ -1.32
VPS4A-203ENST00000564399 APCDD1LQ8NCL9 501 aa6.8□□□□□ -1.32
VPS4A-203ENST00000564399 SIMC1Q8NDZ2 872 aa6.8□□□□□ -1.32
VPS4A-203ENST00000564399 B3GNT7Q8NFL0 401 aa6.8□□□□□ -1.32
VPS4A-203ENST00000564399 LINC01560Q8TB33 94 aa6.8□□□□□ -1.32
VPS4A-203ENST00000564399 SREK1Q8WXA9 508 aaKnown RBP6.8□□□□□ -1.32
VPS4A-203ENST00000564399 LPGAT1Q92604 370 aa6.8□□□□□ -1.32
VPS4A-203ENST00000564399 MED12Q93074 2177 aa6.8□□□□□ -1.32
VPS4A-203ENST00000564399 NCLNQ969V3 563 aa6.8□□□□□ -1.32
VPS4A-203ENST00000564399 VMP1Q96GC9 406 aa6.8□□□□□ -1.32
VPS4A-203ENST00000564399 COX4I2Q96KJ9 171 aa6.8□□□□□ -1.32
VPS4A-203ENST00000564399 FAM173AQ9BQD7 235 aa6.8□□□□□ -1.32
VPS4A-203ENST00000564399 BDH2Q9BUT1 245 aa6.8□□□□□ -1.32
VPS4A-203ENST00000564399 LIN28AQ9H9Z2 209 aaKnown RBP6.8□□□□□ -1.32
VPS4A-203ENST00000564399 IL1RL2Q9HB29 575 aa6.8□□□□□ -1.32
VPS4A-203ENST00000564399 NECTIN3Q9NQS3 549 aa6.8□□□□□ -1.32
VPS4A-203ENST00000564399 PRDM9Q9NQV7 894 aa6.8□□□□□ -1.32
VPS4A-203ENST00000564399 PNO1Q9NRX1 252 aaKnown RBP6.8□□□□□ -1.32
VPS4A-203ENST00000564399 GALPQ9UBC7 116 aa6.8□□□□□ -1.32
VPS4A-203ENST00000564399 FOXD3Q9UJU5 478 aaPredicted RBP6.8□□□□□ -1.32
VPS4A-203ENST00000564399 TFR2Q9UP52 801 aa6.8□□□□□ -1.32
VPS4A-203ENST00000564399 FBN1P35555 2871 aaKnown RBP6.79□□□□□ -1.32
VPS4A-203ENST00000564399 TRGV5A0A0B4J1U4 118 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 A0A1B0GVC2 190 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 CLCA1A8K7I4 914 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 RNF212BA8MTL3 300 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 GOLGA8KD6RF30 607 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 GOLGA8TH3BQL2 631 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 CES2O00748 559 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 OR1F1O43749 312 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 SUSD5O60279 629 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 CEP104O60308 925 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 SMPD2O60906 423 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 MFAP3LO75121 409 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 AVILO75366 819 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 ZFAND5O76080 213 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 GLSO94925 669 aaPredicted RBP6.79□□□□□ -1.32
VPS4A-203ENST00000564399 OR6B1O95007 311 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 VAPBO95292 243 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 APRTP07741 180 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 CELA3AP09093 270 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 ZNF888P0CJ79 500 aaPredicted RBP6.79□□□□□ -1.32
VPS4A-203ENST00000564399 CDH1P12830 882 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 RNH1P13489 461 aaKnown RBP6.79□□□□□ -1.32
VPS4A-203ENST00000564399 CNR1P21554 472 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 NMBRP28336 390 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 SOX3P41225 446 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 HNF4AP41235 474 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 TBPL1P62380 186 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 CUL1Q13616 776 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 RPS6KA1Q15418 735 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 RNF187Q5TA31 235 aaPredicted RBP6.79□□□□□ -1.32
VPS4A-203ENST00000564399 NIPAL1Q6NVV3 410 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 CAVIN1Q6NZI2 390 aaKnown RBP6.79□□□□□ -1.32
VPS4A-203ENST00000564399 FAM47EQ6ZV65 393 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 UBE2R2Q712K3 238 aaPredicted RBP6.79□□□□□ -1.32
VPS4A-203ENST00000564399 ABHD13Q7L211 337 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 GPALPP1Q8IXQ4 340 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 AFAP1L2Q8N4X5 818 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 PRELID2Q8N945 189 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 ZNF740Q8NDX6 193 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 ASB11Q8WXH4 323 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 ALG3Q92685 438 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 PDLIM2Q96JY6 352 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 CAPZA3Q96KX2 299 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 Q96MF0 132 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 SH3GL2Q99962 352 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 PCBD2Q9H0N5 130 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 RAB6BQ9NRW1 208 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 TREX1Q9NSU2 369 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 ZFATQ9P243 1243 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 ADAM21Q9UKJ8 722 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 SH2B3Q9UQQ2 575 aa6.79□□□□□ -1.32
VPS4A-203ENST00000564399 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.78□□□□□ -1.322e-7■□□□□ 9.5
VPS4A-203ENST00000564399 IGKV3D-11A0A0A0MRZ8 115 aa6.78□□□□□ -1.32
VPS4A-203ENST00000564399 GFYI3L273 518 aa6.78□□□□□ -1.32
VPS4A-203ENST00000564399 WWP2O00308 870 aa6.78□□□□□ -1.32
VPS4A-203ENST00000564399 CBFA2T2O43439 604 aa6.78□□□□□ -1.32
VPS4A-203ENST00000564399 PRKNO60260 465 aaPredicted RBP6.78□□□□□ -1.32
VPS4A-203ENST00000564399 HCN1O60741 890 aa6.78□□□□□ -1.32
VPS4A-203ENST00000564399 IL2RAP01589 272 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms