RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 CASD1Q96PB1 797 aa13.4□□□□□ -0.26
VPS9D1-202ENST00000561976 MCCC1Q96RQ3 725 aaPredicted RBP13.4□□□□□ -0.26
VPS9D1-202ENST00000561976 C11orf16Q9NQ32 467 aa13.4□□□□□ -0.26
VPS9D1-202ENST00000561976 TIGARQ9NQ88 270 aa13.4□□□□□ -0.26
VPS9D1-202ENST00000561976 ACER3Q9NUN7 267 aa13.4□□□□□ -0.26
VPS9D1-202ENST00000561976 GPATCH2Q9NW75 528 aa13.4□□□□□ -0.26
VPS9D1-202ENST00000561976 ENOPH1Q9UHY7 261 aa13.4□□□□□ -0.26
VPS9D1-202ENST00000561976 LRFN2Q9ULH4 789 aa13.4□□□□□ -0.26
VPS9D1-202ENST00000561976 NDUFB5O43674 189 aa13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 MPZL2O60487 215 aa13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 UGT2B17O75795 530 aa13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 GBAP04062 536 aa13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 CHMP24386 653 aa13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 CXCR2P25025 360 aa13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 CRISP1P54107 249 aa13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 ZNF33BQ06732 778 aa13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 ZNF385BQ569K4 471 aa13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 DGKKQ5KSL6 1271 aa13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 C19orf48Q6RUI8 117 aa13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 RNF130Q86XS8 419 aa13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 FAM217AQ8IXS0 508 aa13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 GEMIN6Q8WXD5 167 aaKnown RBP13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 COQ8BQ96D53 544 aa13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 SCRN2Q96FV2 425 aa13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 ST6GAL2Q96JF0 529 aa13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 OPALINQ96PE5 141 aa13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 SLC22A12Q96S37 553 aa13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 TMEM246Q9BRR3 403 aa13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 TTYH2Q9BSA4 534 aa13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 THSD1Q9NS62 852 aa13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 RAB23Q9ULC3 237 aa13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 GABRQQ9UN88 632 aa13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 KLHL20Q9Y2M5 609 aa13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 PCDHGB2Q9Y5G2 931 aa13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 PRAMEF33A0A0G2JMD5 474 aa13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 TBKBP1A7MCY6 615 aa13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 CENPBD1B2RD01 187 aa13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 RNASET2O00584 256 aaKnown RBP13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 PRAMEF10O60809 474 aa13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 SEMA3DO95025 777 aa13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 GASTP01350 101 aa13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 GALTP07902 379 aa13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 LHCGRP22888 699 aa13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 CCND3P30281 292 aaPredicted RBP13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 CHI3L1P36222 383 aaPredicted RBP13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 RORCP51449 518 aa13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 CDK6Q00534 326 aa13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 DOC2BQ14184 412 aa13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 BAK1Q16611 211 aa13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 KLHL17Q6TDP4 642 aa13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 LAX1Q8IWV1 398 aa13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 OR2AP1Q8NGE2 309 aa13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 BCL7CQ8WUZ0 217 aaPredicted RBP13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 CHTF18Q8WVB6 975 aa13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 BARHL1Q9BZE3 327 aa13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 MAPRE3Q9UPY8 281 aa13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 FRMPD3Q5JV73 1810 aa13.39□□□□□ -0.27
VPS9D1-202ENST00000561976 MEIOCA2RUB1 952 aa13.38□□□□□ -0.27
VPS9D1-202ENST00000561976 FADS2P1A8MWK0 482 aa13.38□□□□□ -0.27
VPS9D1-202ENST00000561976 ENTPD6O75354 484 aa13.38□□□□□ -0.27
VPS9D1-202ENST00000561976 TNFRSF21O75509 655 aa13.38□□□□□ -0.27
VPS9D1-202ENST00000561976 SLC10A3P09131 477 aa13.38□□□□□ -0.27
VPS9D1-202ENST00000561976 PSMA1P25786 263 aaKnown RBP13.38□□□□□ -0.27
VPS9D1-202ENST00000561976 RFX2P48378 723 aa13.38□□□□□ -0.27
VPS9D1-202ENST00000561976 MXD1Q05195 221 aa13.38□□□□□ -0.27
VPS9D1-202ENST00000561976 CDK10Q15131 360 aa13.38□□□□□ -0.27
VPS9D1-202ENST00000561976 FRMPD2BQ6IN97 320 aa13.38□□□□□ -0.27
VPS9D1-202ENST00000561976 GRHL2Q6ISB3 625 aa13.38□□□□□ -0.27
VPS9D1-202ENST00000561976 OR52N2Q8NGI0 321 aa13.38□□□□□ -0.27
VPS9D1-202ENST00000561976 HUS1BQ8NHY5 278 aa13.38□□□□□ -0.27
VPS9D1-202ENST00000561976 ASB15Q8WXK1 588 aa13.38□□□□□ -0.27
VPS9D1-202ENST00000561976 C11orf24Q96F05 449 aaPredicted RBP13.38□□□□□ -0.27
VPS9D1-202ENST00000561976 ZFYVE19Q96K21 471 aa13.38□□□□□ -0.27
VPS9D1-202ENST00000561976 TMEM121BQ9BXQ6 578 aaPredicted RBP13.38□□□□□ -0.27
VPS9D1-202ENST00000561976 MMP28Q9H239 520 aa13.38□□□□□ -0.27
VPS9D1-202ENST00000561976 TRIM39Q9HCM9 518 aa13.38□□□□□ -0.27
VPS9D1-202ENST00000561976 HHATLQ9HCP6 504 aa13.38□□□□□ -0.27
VPS9D1-202ENST00000561976 ABCB8Q9NUT2 735 aa13.38□□□□□ -0.27
VPS9D1-202ENST00000561976 SCN8AQ9UQD0 1980 aa13.38□□□□□ -0.27
VPS9D1-202ENST00000561976 TRBC2A0A5B9 178 aa13.38□□□□□ -0.27
VPS9D1-202ENST00000561976 H0YIV9 168 aa13.38□□□□□ -0.27
VPS9D1-202ENST00000561976 AGRPO00253 132 aa13.38□□□□□ -0.27
VPS9D1-202ENST00000561976 IFNA14P01570 189 aa13.38□□□□□ -0.27
VPS9D1-202ENST00000561976 SCG5P05408 212 aa13.38□□□□□ -0.27
VPS9D1-202ENST00000561976 HSD3B1P14060 373 aa13.38□□□□□ -0.27
VPS9D1-202ENST00000561976 HSD3B2P26439 372 aa13.38□□□□□ -0.27
VPS9D1-202ENST00000561976 TIA1P31483 386 aaKnown RBP eCLIP13.38□□□□□ -0.27
VPS9D1-202ENST00000561976 SOAT1P35610 550 aa13.38□□□□□ -0.27
VPS9D1-202ENST00000561976 DDOSTP39656 456 aa13.38□□□□□ -0.27
VPS9D1-202ENST00000561976 XCR1P46094 333 aa13.38□□□□□ -0.27
VPS9D1-202ENST00000561976 MVDP53602 400 aa13.38□□□□□ -0.27
VPS9D1-202ENST00000561976 RPS13P62277 151 aaKnown RBP13.38□□□□□ -0.27
VPS9D1-202ENST00000561976 TSTA3Q13630 321 aaPredicted RBP13.38□□□□□ -0.27
VPS9D1-202ENST00000561976 SPIN4Q56A73 249 aa13.38□□□□□ -0.27
VPS9D1-202ENST00000561976 KIAA1841Q6NSI8 718 aa13.38□□□□□ -0.27
VPS9D1-202ENST00000561976 TRIM40Q6P9F5 258 aa13.38□□□□□ -0.27
VPS9D1-202ENST00000561976 AGTRAPQ6RW13 159 aa13.38□□□□□ -0.27
VPS9D1-202ENST00000561976 TRIM69Q86WT6 500 aa13.38□□□□□ -0.27
VPS9D1-202ENST00000561976 ARL14EPQ8N8R7 260 aaPredicted RBP13.38□□□□□ -0.27
VPS9D1-202ENST00000561976 PCSK9Q8NBP7 692 aaKnown RBP13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms