RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 IFI44Q8TCB0 444 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 CIDECQ96AQ7 238 aaPredicted RBP5.2□□□□□ -1.58
VPS13C-209ENST00000560637 FBXL8Q96CD0 374 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 ITCHQ96J02 903 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 CMKLR1Q99788 373 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 TMEM79Q9BSE2 394 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 DHRS4Q9BTZ2 278 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 ULBP3Q9BZM4 244 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 GRIP2Q9C0E4 1043 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 STRADBQ9C0K7 418 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 SPNS1Q9H2V7 528 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 POPDC3Q9HBV1 291 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 ZBTB20Q9HC78 741 aaPredicted RBP5.2□□□□□ -1.58
VPS13C-209ENST00000560637 SSU72Q9NP77 194 aaKnown RBP5.2□□□□□ -1.58
VPS13C-209ENST00000560637 ZNF624Q9P2J8 865 aaPredicted RBP5.2□□□□□ -1.58
VPS13C-209ENST00000560637 RPS6KB2Q9UBS0 482 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 PPIEQ9UNP9 301 aaKnown RBP5.2□□□□□ -1.58
VPS13C-209ENST00000560637 HS3ST3A1Q9Y663 406 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 SPTBN1Q01082 2364 aaKnown RBP5.2□□□□□ -1.58
VPS13C-209ENST00000560637 CHD9Q3L8U1 2897 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 CHD8Q9HCK8 2581 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 LTBP2Q14767 1821 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 CROCCQ5TZA2 2017 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 EYSQ5T1H1 3165 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 DCDC2BA2VCK2 349 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 hCG_2039718K7EN88 272 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 KPNA4O00629 521 aaPredicted RBP5.2□□□□□ -1.58
VPS13C-209ENST00000560637 E2F3O00716 465 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 UNC5CO95185 931 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 NR2F6P10588 404 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 LAMP1P11279 417 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 NPPBP16860 134 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 CSNK2A2P19784 350 aaPredicted RBP5.2□□□□□ -1.58
VPS13C-209ENST00000560637 SLC6A2P23975 617 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 RBMS1P29558 406 aaKnown RBP5.2□□□□□ -1.58
VPS13C-209ENST00000560637 DPTQ07507 201 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 RPA4Q13156 261 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 TAF11Q15544 211 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 FAM69BQ5VUD6 431 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 KIAA1614Q5VZ46 1190 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 OLIG3Q7RTU3 272 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 STK32CQ86UX6 486 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 CNPY4Q8N129 248 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 TMEM156Q8N614 296 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 COX18Q8N8Q8 333 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 OR2L3Q8NG85 312 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 UTP15Q8TED0 518 aaKnown RBP5.2□□□□□ -1.58
VPS13C-209ENST00000560637 FATE1Q969F0 183 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 DGAT2Q96PD7 388 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 BTBD9Q96Q07 612 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 VPS35Q96QK1 796 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 TMEM121BQ9BXQ6 578 aaPredicted RBP5.2□□□□□ -1.58
VPS13C-209ENST00000560637 ACPTQ9BZG2 426 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 C3orf14Q9HBI5 128 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 TMEM9BQ9NQ34 198 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 ANKRD10Q9NXR5 420 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 SLC39A1Q9NY26 324 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 OR6C2Q9NZP2 312 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 SH2B3Q9UQQ2 575 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 PCDHB3Q9Y5E6 796 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 LCMT2O60294 686 aaKnown RBP5.2□□□□□ -1.58
VPS13C-209ENST00000560637 DFNA5O60443 496 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 PRMT3O60678 531 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 KRT36O76013 467 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 BMP10O95393 424 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 FAM58BPP0C7Q3 252 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 POU2F1P14859 743 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 ASMTP46597 345 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 CLNS1AP54105 237 aaKnown RBP5.2□□□□□ -1.58
VPS13C-209ENST00000560637 BNC1Q01954 994 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 ACVR1Q04771 509 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 LIPEQ05469 1076 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 LAPTM4AQ15012 233 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 NDUFAF5Q5TEU4 345 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 FAM199XQ6PEV8 388 aaPredicted RBP5.2□□□□□ -1.58
VPS13C-209ENST00000560637 FIGNL1Q6PIW4 674 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 OXR1Q8N573 874 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 GAB3Q8WWW8 586 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 PROX1Q92786 737 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 SORT1Q99523 831 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 SLC35A5Q9BS91 424 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 CRB3Q9BUF7 120 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 DUSP23Q9BVJ7 150 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 C1QTNF1Q9BXJ1 281 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 TEX101Q9BY14 249 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 ADNPQ9H2P0 1102 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 RPF2Q9H7B2 306 aaKnown RBP5.2□□□□□ -1.58
VPS13C-209ENST00000560637 SPAG4Q9NPE6 437 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 PRTFDC1Q9NRG1 225 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 POT1Q9NUX5 634 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 ZSCAN32Q9NX65 697 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 SEC14L3Q9UDX4 400 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 CDV3Q9UKY7 258 aaKnown RBP5.2□□□□□ -1.58
VPS13C-209ENST00000560637 PTRH2Q9Y3E5 179 aaKnown RBP5.2□□□□□ -1.58
VPS13C-209ENST00000560637 ALPK3Q96L96 1907 aa5.2□□□□□ -1.58
VPS13C-209ENST00000560637 COL6A3P12111 3177 aa5.19□□□□□ -1.58
VPS13C-209ENST00000560637 A0A0J9YY10 115 aa5.19□□□□□ -1.58
VPS13C-209ENST00000560637 H3BN98 237 aa5.19□□□□□ -1.58
VPS13C-209ENST00000560637 HS6ST1O60243 411 aa5.19□□□□□ -1.58
VPS13C-209ENST00000560637 EEDO75530 441 aaKnown RBP5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms