RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 SERPINB3P29508 390 aa11.23□□□□□ -0.61
LDLR-212ENST00000560467 PRDX3P30048 256 aaKnown RBP11.23□□□□□ -0.61
LDLR-212ENST00000560467 ARRB2P32121 409 aa11.23□□□□□ -0.61
LDLR-212ENST00000560467 PIK3CBP42338 1070 aa11.23□□□□□ -0.61
LDLR-212ENST00000560467 RPS18P62269 152 aaKnown RBP11.23□□□□□ -0.61
LDLR-212ENST00000560467 BTKQ06187 659 aa11.23□□□□□ -0.61
LDLR-212ENST00000560467 TGM3Q08188 693 aa11.23□□□□□ -0.61
LDLR-212ENST00000560467 CSTF3Q12996 717 aaKnown RBP11.23□□□□□ -0.61
LDLR-212ENST00000560467 DDX39BQ13838 428 aaKnown RBP11.23□□□□□ -0.61
LDLR-212ENST00000560467 KCNAB1Q14722 419 aa11.23□□□□□ -0.61
LDLR-212ENST00000560467 NR6A1Q15406 480 aa11.23□□□□□ -0.61
LDLR-212ENST00000560467 SLC5A12Q1EHB4 618 aa11.23□□□□□ -0.61
LDLR-212ENST00000560467 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.23□□□□□ -0.61
LDLR-212ENST00000560467 NADK2Q4G0N4 442 aa11.23□□□□□ -0.61
LDLR-212ENST00000560467 CATSPEREQ5SY80 951 aa11.23□□□□□ -0.61
LDLR-212ENST00000560467 FHL5Q5TD97 284 aa11.23□□□□□ -0.61
LDLR-212ENST00000560467 IRGCQ6NXR0 463 aa11.23□□□□□ -0.61
LDLR-212ENST00000560467 CHSY3Q70JA7 882 aa11.23□□□□□ -0.61
LDLR-212ENST00000560467 SPATA19Q7Z5L4 167 aa11.23□□□□□ -0.61
LDLR-212ENST00000560467 APLFQ8IW19 511 aaPredicted RBP11.23□□□□□ -0.61
LDLR-212ENST00000560467 ADGRF3Q8IZF5 1079 aa11.23□□□□□ -0.61
LDLR-212ENST00000560467 LINC01555Q8NAE3 123 aa11.23□□□□□ -0.61
LDLR-212ENST00000560467 GALNT11Q8NCW6 608 aa11.23□□□□□ -0.61
LDLR-212ENST00000560467 TRPV3Q8NET8 790 aa11.23□□□□□ -0.61
LDLR-212ENST00000560467 N4BP2L2Q92802 583 aaPredicted RBP11.23□□□□□ -0.61
LDLR-212ENST00000560467 RERGQ96A58 199 aaPredicted RBP11.23□□□□□ -0.61
LDLR-212ENST00000560467 MTFMTQ96DP5 389 aaKnown RBP11.23□□□□□ -0.61
LDLR-212ENST00000560467 KCNA7Q96RP8 456 aa11.23□□□□□ -0.61
LDLR-212ENST00000560467 CD180Q99467 661 aa11.23□□□□□ -0.61
LDLR-212ENST00000560467 SERPINI1Q99574 410 aa11.23□□□□□ -0.61
LDLR-212ENST00000560467 DPH7Q9BTV6 452 aa11.23□□□□□ -0.61
LDLR-212ENST00000560467 MENTQ9BUN1 341 aa11.23□□□□□ -0.61
LDLR-212ENST00000560467 AKIRIN1Q9H9L7 192 aaPredicted RBP11.23□□□□□ -0.61
LDLR-212ENST00000560467 BRF2Q9HAW0 419 aa11.23□□□□□ -0.61
LDLR-212ENST00000560467 LHX9Q9NQ69 397 aa11.23□□□□□ -0.61
LDLR-212ENST00000560467 PADI1Q9ULC6 663 aa11.23□□□□□ -0.61
LDLR-212ENST00000560467 BTRCQ9Y297 605 aa11.23□□□□□ -0.61
LDLR-212ENST00000560467 PCDHGA6Q9Y5G7 932 aa11.23□□□□□ -0.61
LDLR-212ENST00000560467 A0A0J9YY10 115 aa11.22□□□□□ -0.61
LDLR-212ENST00000560467 TRBC2A0A5B9 178 aa11.22□□□□□ -0.61
LDLR-212ENST00000560467 FOXE1O00358 373 aaPredicted RBP11.22□□□□□ -0.61
LDLR-212ENST00000560467 UBDO15205 165 aa11.22□□□□□ -0.61
LDLR-212ENST00000560467 SEC22BO75396 215 aa11.22□□□□□ -0.61
LDLR-212ENST00000560467 CCNYL3P0C7X3 344 aa11.22□□□□□ -0.61
LDLR-212ENST00000560467 UGT2B7P16662 529 aa11.22□□□□□ -0.61
LDLR-212ENST00000560467 NELFEP18615 380 aaKnown RBP11.22□□□□□ -0.61
LDLR-212ENST00000560467 VARSP26640 1264 aaKnown RBP11.22□□□□□ -0.61
LDLR-212ENST00000560467 EPHA3P29320 983 aa11.22□□□□□ -0.61
LDLR-212ENST00000560467 PGDP52209 483 aa11.22□□□□□ -0.61
LDLR-212ENST00000560467 RPS15AP62244 130 aaKnown RBP11.22□□□□□ -0.61
LDLR-212ENST00000560467 TUBB3Q13509 450 aa11.22□□□□□ -0.61
LDLR-212ENST00000560467 IL10RAQ13651 578 aa11.22□□□□□ -0.61
LDLR-212ENST00000560467 ZXDCQ2QGD7 858 aaPredicted RBP11.22□□□□□ -0.61
LDLR-212ENST00000560467 SMU1Q2TAY7 513 aa11.22□□□□□ -0.61
LDLR-212ENST00000560467 UGT3A2Q3SY77 523 aa11.22□□□□□ -0.61
LDLR-212ENST00000560467 PRR30Q53SZ7 412 aaPredicted RBP11.22□□□□□ -0.61
LDLR-212ENST00000560467 ZC3H12BQ5HYM0 836 aaKnown RBP11.22□□□□□ -0.61
LDLR-212ENST00000560467 VWA5B1Q5TIE3 1220 aa11.22□□□□□ -0.61
LDLR-212ENST00000560467 PWWP2BQ6NUJ5 590 aa11.22□□□□□ -0.61
LDLR-212ENST00000560467 SPESP1Q6UW49 350 aa11.22□□□□□ -0.61
LDLR-212ENST00000560467 RNF165Q6ZSG1 346 aa11.22□□□□□ -0.61
LDLR-212ENST00000560467 TRIM46Q7Z4K8 759 aa11.22□□□□□ -0.61
LDLR-212ENST00000560467 PPP1R3BQ86XI6 285 aa11.22□□□□□ -0.61
LDLR-212ENST00000560467 CARFQ8N187 725 aa11.22□□□□□ -0.61
LDLR-212ENST00000560467 OR7G3Q8NG95 312 aa11.22□□□□□ -0.61
LDLR-212ENST00000560467 SSC4DQ8WTU2 575 aa11.22□□□□□ -0.61
LDLR-212ENST00000560467 KLHL6Q8WZ60 621 aa11.22□□□□□ -0.61
LDLR-212ENST00000560467 THAP11Q96EK4 314 aa11.22□□□□□ -0.61
LDLR-212ENST00000560467 METTL2AQ96IZ6 378 aaKnown RBP11.22□□□□□ -0.61
LDLR-212ENST00000560467 QRFPRQ96P65 431 aa11.22□□□□□ -0.61
LDLR-212ENST00000560467 WDR55Q9H6Y2 383 aaPredicted RBP11.22□□□□□ -0.61
LDLR-212ENST00000560467 SPHK1Q9NYA1 384 aa11.22□□□□□ -0.61
LDLR-212ENST00000560467 LUZP4Q9P127 313 aa11.22□□□□□ -0.61
LDLR-212ENST00000560467 VPS29Q9UBQ0 182 aa11.22□□□□□ -0.61
LDLR-212ENST00000560467 EPHA6Q9UF33 1036 aa11.22□□□□□ -0.61
LDLR-212ENST00000560467 IGHV5-51A0A0C4DH38 117 aa11.21□□□□□ -0.61
LDLR-212ENST00000560467 ARHGAP10A1A4S6 786 aa11.21□□□□□ -0.61
LDLR-212ENST00000560467 URADA6NGE7 173 aa11.21□□□□□ -0.61
LDLR-212ENST00000560467 ARGFXA6NJG6 315 aa11.21□□□□□ -0.61
LDLR-212ENST00000560467 C21orf140B9A014 251 aa11.21□□□□□ -0.61
LDLR-212ENST00000560467 TXNDC9O14530 226 aa11.21□□□□□ -0.61
LDLR-212ENST00000560467 PEX11AO75192 247 aa11.21□□□□□ -0.61
LDLR-212ENST00000560467 SORBS2O94875 1100 aaKnown RBP11.21□□□□□ -0.61
LDLR-212ENST00000560467 PDYNP01213 254 aa11.21□□□□□ -0.61
LDLR-212ENST00000560467 SERPIND1P05546 499 aa11.21□□□□□ -0.61
LDLR-212ENST00000560467 FOLR1P15328 257 aa11.21□□□□□ -0.61
LDLR-212ENST00000560467 EPORP19235 508 aa11.21□□□□□ -0.61
LDLR-212ENST00000560467 PSMB5P28074 263 aa11.21□□□□□ -0.61
LDLR-212ENST00000560467 AHRP35869 848 aa11.21□□□□□ -0.61
LDLR-212ENST00000560467 RAP1GDS1P52306 607 aa11.21□□□□□ -0.61
LDLR-212ENST00000560467 FOXA1P55317 472 aa11.21□□□□□ -0.61
LDLR-212ENST00000560467 RGS1Q08116 209 aa11.21□□□□□ -0.61
LDLR-212ENST00000560467 ABRAXAS2Q15018 415 aa11.21□□□□□ -0.61
LDLR-212ENST00000560467 GSTA3Q16772 222 aa11.21□□□□□ -0.61
LDLR-212ENST00000560467 UGT8Q16880 541 aa11.21□□□□□ -0.61
LDLR-212ENST00000560467 GALNTL6Q49A17 601 aa11.21□□□□□ -0.61
LDLR-212ENST00000560467 TMEM35AQ53FP2 167 aa11.21□□□□□ -0.61
LDLR-212ENST00000560467 TMTC4Q5T4D3 741 aa11.21□□□□□ -0.61
LDLR-212ENST00000560467 CGB2Q6NT52 195 aa11.21□□□□□ -0.61
LDLR-212ENST00000560467 FAM199XQ6PEV8 388 aaPredicted RBP11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms