RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 PROCP04070 461 aa8.84□□□□□ -0.99
LDLR-211ENST00000560173 HEXBP07686 556 aa8.84□□□□□ -0.99
LDLR-211ENST00000560173 CYC1P08574 325 aa8.84□□□□□ -0.99
LDLR-211ENST00000560173 SFTPCP11686 197 aa8.84□□□□□ -0.99
LDLR-211ENST00000560173 PCNAP12004 261 aa8.84□□□□□ -0.99
LDLR-211ENST00000560173 KRT4P19013 534 aa8.84□□□□□ -0.99
LDLR-211ENST00000560173 TAC1P20366 129 aa8.84□□□□□ -0.99
LDLR-211ENST00000560173 HPDP32754 393 aaPredicted RBP8.84□□□□□ -0.99
LDLR-211ENST00000560173 CRHR1P34998 444 aa8.84□□□□□ -0.99
LDLR-211ENST00000560173 PRKAA2P54646 552 aa8.84□□□□□ -0.99
LDLR-211ENST00000560173 EMP2P54851 167 aa8.84□□□□□ -0.99
LDLR-211ENST00000560173 RRADP55042 308 aa8.84□□□□□ -0.99
LDLR-211ENST00000560173 HERVK_113P63132 956 aa8.84□□□□□ -0.99
LDLR-211ENST00000560173 PPP2R2AP63151 447 aa8.84□□□□□ -0.99
LDLR-211ENST00000560173 OLR1P78380 273 aa8.84□□□□□ -0.99
LDLR-211ENST00000560173 SLC18A2Q05940 514 aa8.84□□□□□ -0.99
LDLR-211ENST00000560173 SRSF1Q07955 248 aaKnown RBP eCLIP8.84□□□□□ -0.991e-6■■■□□ 18.1
LDLR-211ENST00000560173 TRAF3Q13114 568 aa8.84□□□□□ -0.99
LDLR-211ENST00000560173 DCAF10Q5QP82 559 aa8.84□□□□□ -0.99
LDLR-211ENST00000560173 LIPJQ5W064 366 aa8.84□□□□□ -0.99
LDLR-211ENST00000560173 KIRREL2Q6UWL6 708 aa8.84□□□□□ -0.99
LDLR-211ENST00000560173 TRABD2AQ86V40 505 aa8.84□□□□□ -0.99
LDLR-211ENST00000560173 MYLK4Q86YV6 388 aaPredicted RBP8.84□□□□□ -0.99
LDLR-211ENST00000560173 C4orf33Q8N1A6 199 aa8.84□□□□□ -0.99
LDLR-211ENST00000560173 OR2L5Q8NG80 312 aa8.84□□□□□ -0.99
LDLR-211ENST00000560173 OR11G2Q8NGC1 345 aa8.84□□□□□ -0.99
LDLR-211ENST00000560173 HUS1BQ8NHY5 278 aa8.84□□□□□ -0.99
LDLR-211ENST00000560173 QRFPRQ96P65 431 aa8.84□□□□□ -0.99
LDLR-211ENST00000560173 TMEM237Q96Q45 408 aa8.84□□□□□ -0.99
LDLR-211ENST00000560173 OR1F2PQ96R84 312 aa8.84□□□□□ -0.99
LDLR-211ENST00000560173 F2RL3Q96RI0 385 aa8.84□□□□□ -0.99
LDLR-211ENST00000560173 NTMT1Q9BV86 223 aa8.84□□□□□ -0.99
LDLR-211ENST00000560173 ERVK-6Q9BXR3 956 aa8.84□□□□□ -0.99
LDLR-211ENST00000560173 MS4A8Q9BY19 250 aa8.84□□□□□ -0.99
LDLR-211ENST00000560173 VN1R1Q9GZP7 353 aa8.84□□□□□ -0.99
LDLR-211ENST00000560173 REXO4Q9GZR2 422 aaKnown RBP8.84□□□□□ -0.99
LDLR-211ENST00000560173 ACSS2Q9NR19 701 aa8.84□□□□□ -0.99
LDLR-211ENST00000560173 LANCL2Q9NS86 450 aa8.84□□□□□ -0.99
LDLR-211ENST00000560173 MKS1Q9NXB0 559 aa8.84□□□□□ -0.99
LDLR-211ENST00000560173 MKL2Q9ULH7 1088 aa8.84□□□□□ -0.99
LDLR-211ENST00000560173 RNF11Q9Y3C5 154 aa8.84□□□□□ -0.99
LDLR-211ENST00000560173 UBR5O95071 2799 aaPredicted RBP8.84□□□□□ -1
LDLR-211ENST00000560173 LOC102723996A0A087X1L8 192 aa8.83□□□□□ -1
LDLR-211ENST00000560173 A0A0G2JN53 185 aa8.83□□□□□ -1
LDLR-211ENST00000560173 A0A1B0GTL3 188 aa8.83□□□□□ -1
LDLR-211ENST00000560173 G3V2L1 256 aa8.83□□□□□ -1
LDLR-211ENST00000560173 MKRN2OSH3BPM6 223 aa8.83□□□□□ -1
LDLR-211ENST00000560173 COPEO14579 308 aa8.83□□□□□ -1
LDLR-211ENST00000560173 PCDH17O14917 1159 aa8.83□□□□□ -1
LDLR-211ENST00000560173 PLIN3O60664 434 aa8.83□□□□□ -1
LDLR-211ENST00000560173 SHOX2O60902 331 aaPredicted RBP8.83□□□□□ -1
LDLR-211ENST00000560173 ALOX12BO75342 701 aa8.83□□□□□ -1
LDLR-211ENST00000560173 CLDN9O95484 217 aa8.83□□□□□ -1
LDLR-211ENST00000560173 FHP07954 510 aa8.83□□□□□ -1
LDLR-211ENST00000560173 COX6A1P12074 109 aa8.83□□□□□ -1
LDLR-211ENST00000560173 ACPPP15309 386 aa8.83□□□□□ -1
LDLR-211ENST00000560173 IL10P22301 178 aa8.83□□□□□ -1
LDLR-211ENST00000560173 PIK3CBP42338 1070 aa8.83□□□□□ -1
LDLR-211ENST00000560173 CCT5P48643 541 aa8.83□□□□□ -1
LDLR-211ENST00000560173 CCNG1P51959 295 aa8.83□□□□□ -1
LDLR-211ENST00000560173 PLA2G16P53816 162 aa8.83□□□□□ -1
LDLR-211ENST00000560173 CDH13P55290 713 aa8.83□□□□□ -1
LDLR-211ENST00000560173 MAGOHP61326 146 aaKnown RBP8.83□□□□□ -1
LDLR-211ENST00000560173 BTN3A2P78410 334 aa8.83□□□□□ -1
LDLR-211ENST00000560173 DDX39BQ13838 428 aaKnown RBP8.83□□□□□ -1
LDLR-211ENST00000560173 ZRSR2Q15696 482 aaKnown RBP8.83□□□□□ -1
LDLR-211ENST00000560173 CPSF6Q16630 551 aaKnown RBP eCLIP8.83□□□□□ -1
LDLR-211ENST00000560173 MINDY4Q4G0A6 757 aa8.83□□□□□ -1
LDLR-211ENST00000560173 GGTA1PQ4G0N0 100 aa8.83□□□□□ -1
LDLR-211ENST00000560173 TMEM35AQ53FP2 167 aa8.83□□□□□ -1
LDLR-211ENST00000560173 UNC50Q53HI1 259 aa8.83□□□□□ -1
LDLR-211ENST00000560173 TNFAIP8L3Q5GJ75 292 aa8.83□□□□□ -1
LDLR-211ENST00000560173 ZNF678Q5SXM1 525 aa8.83□□□□□ -1
LDLR-211ENST00000560173 TRIM40Q6P9F5 258 aa8.83□□□□□ -1
LDLR-211ENST00000560173 ABHD17CQ6PCB6 329 aa8.83□□□□□ -1
LDLR-211ENST00000560173 TMEM205Q6UW68 189 aa8.83□□□□□ -1
LDLR-211ENST00000560173 ZYG11AQ6WRX3 759 aa8.83□□□□□ -1
LDLR-211ENST00000560173 RPS27LQ71UM5 84 aaKnown RBP8.83□□□□□ -1
LDLR-211ENST00000560173 UBE3DQ7Z6J8 389 aa8.83□□□□□ -1
LDLR-211ENST00000560173 SLC22A9Q8IVM8 553 aa8.83□□□□□ -1
LDLR-211ENST00000560173 CA13Q8N1Q1 262 aa8.83□□□□□ -1
LDLR-211ENST00000560173 C9orf43Q8TAL5 461 aaPredicted RBP8.83□□□□□ -1
LDLR-211ENST00000560173 WDR20Q8TBZ3 569 aa8.83□□□□□ -1
LDLR-211ENST00000560173 ATP6V1E2Q96A05 226 aa8.83□□□□□ -1
LDLR-211ENST00000560173 TBC1D20Q96BZ9 403 aa8.83□□□□□ -1
LDLR-211ENST00000560173 C8orf44Q96CB5 159 aa8.83□□□□□ -1
LDLR-211ENST00000560173 REPS1Q96D71 796 aa8.83□□□□□ -1
LDLR-211ENST00000560173 CMTM7Q96FZ5 175 aa8.83□□□□□ -1
LDLR-211ENST00000560173 ABHD17AQ96GS6 310 aa8.83□□□□□ -1
LDLR-211ENST00000560173 PEX11GQ96HA9 241 aa8.83□□□□□ -1
LDLR-211ENST00000560173 FER1L6-AS2Q96M78 137 aa8.83□□□□□ -1
LDLR-211ENST00000560173 CDK15Q96Q40 435 aa8.83□□□□□ -1
LDLR-211ENST00000560173 RBCK1Q9BYM8 510 aa8.83□□□□□ -1
LDLR-211ENST00000560173 SEMA4BQ9NPR2 832 aaPredicted RBP8.83□□□□□ -1
LDLR-211ENST00000560173 DMRT3Q9NQL9 472 aa8.83□□□□□ -1
LDLR-211ENST00000560173 ADGRE2Q9UHX3 823 aa8.83□□□□□ -1
LDLR-211ENST00000560173 GRID1Q9ULK0 1009 aa8.83□□□□□ -1
LDLR-211ENST00000560173 PCDHGA11Q9Y5H2 935 aa8.83□□□□□ -1
LDLR-211ENST00000560173 PTPN13Q12923 2485 aa8.83□□□□□ -1
LDLR-211ENST00000560173 CNTRLQ7Z7A1 2325 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 103.2 ms