RNA–Protein interactions for RNA: ENST00000559460.5

SMAD3-211, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 568 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-211ENST00000559460 FOXO1Q12778 655 aa8.92□□□□□ -0.98
SMAD3-211ENST00000559460 TBL3Q12788 808 aaKnown RBP8.92□□□□□ -0.98
SMAD3-211ENST00000559460 SPARCL1Q14515 664 aa8.92□□□□□ -0.98
SMAD3-211ENST00000559460 TERF2Q15554 542 aa8.92□□□□□ -0.98
SMAD3-211ENST00000559460 FASTKD1Q53R41 847 aaKnown RBP8.92□□□□□ -0.98
SMAD3-211ENST00000559460 CCDC181Q5TID7 509 aa8.92□□□□□ -0.98
SMAD3-211ENST00000559460 ALKBH5Q6P6C2 394 aaKnown RBP8.92□□□□□ -0.98
SMAD3-211ENST00000559460 OPN5Q6U736 354 aa8.92□□□□□ -0.98
SMAD3-211ENST00000559460 H2AFVQ71UI9 128 aa8.92□□□□□ -0.98
SMAD3-211ENST00000559460 PDSS2Q86YH6 399 aa8.92□□□□□ -0.98
SMAD3-211ENST00000559460 KCT2Q8NC54 265 aa8.92□□□□□ -0.98
SMAD3-211ENST00000559460 NFAM1Q8NET5 270 aaPredicted RBP8.92□□□□□ -0.98
SMAD3-211ENST00000559460 SLC13A3Q8WWT9 602 aa8.92□□□□□ -0.98
SMAD3-211ENST00000559460 JSRP1Q96MG2 331 aaPredicted RBP8.92□□□□□ -0.98
SMAD3-211ENST00000559460 PRAP1Q96NZ9 151 aa8.92□□□□□ -0.98
SMAD3-211ENST00000559460 RASL10BQ96S79 203 aa8.92□□□□□ -0.98
SMAD3-211ENST00000559460 WDR83Q9BRX9 315 aaKnown RBP8.92□□□□□ -0.98
SMAD3-211ENST00000559460 SFXN3Q9BWM7 321 aa8.92□□□□□ -0.98
SMAD3-211ENST00000559460 ACBD3Q9H3P7 528 aa8.92□□□□□ -0.98
SMAD3-211ENST00000559460 PIGMQ9H3S5 423 aa8.92□□□□□ -0.98
SMAD3-211ENST00000559460 ZNF703Q9H7S9 590 aaPredicted RBP8.92□□□□□ -0.98
SMAD3-211ENST00000559460 LIN28AQ9H9Z2 209 aaKnown RBP8.92□□□□□ -0.98
SMAD3-211ENST00000559460 ARNT2Q9HBZ2 717 aa8.92□□□□□ -0.98
SMAD3-211ENST00000559460 ZNF701Q9NV72 531 aaPredicted RBP8.92□□□□□ -0.98
SMAD3-211ENST00000559460 TMEM184CQ9NVA4 438 aa8.92□□□□□ -0.98
SMAD3-211ENST00000559460 QPCTLQ9NXS2 382 aa8.92□□□□□ -0.98
SMAD3-211ENST00000559460 KLHL28Q9NXS3 571 aa8.92□□□□□ -0.98
SMAD3-211ENST00000559460 PSD3Q9NYI0 1048 aa8.92□□□□□ -0.98
SMAD3-211ENST00000559460 MYOTQ9UBF9 498 aa8.92□□□□□ -0.98
SMAD3-211ENST00000559460 ATG4BQ9Y4P1 393 aa8.92□□□□□ -0.98
SMAD3-211ENST00000559460 SLC22A7Q9Y694 548 aa8.92□□□□□ -0.98
SMAD3-211ENST00000559460 ZANQ9Y493 2812 aa8.91□□□□□ -0.98
SMAD3-211ENST00000559460 MACROD2A1Z1Q3 448 aa8.91□□□□□ -0.98
SMAD3-211ENST00000559460 CCDC162PA2VCL2 907 aa8.91□□□□□ -0.98
SMAD3-211ENST00000559460 MBD3L3A6NE82 208 aaPredicted RBP8.91□□□□□ -0.98
SMAD3-211ENST00000559460 CD8B2A6NJW9 211 aa8.91□□□□□ -0.98
SMAD3-211ENST00000559460 PRMT5O14744 637 aaPredicted RBP8.91□□□□□ -0.98
SMAD3-211ENST00000559460 CHST10O43529 356 aa8.91□□□□□ -0.98
SMAD3-211ENST00000559460 SYF2O95926 243 aaKnown RBP8.91□□□□□ -0.98
SMAD3-211ENST00000559460 CATP04040 527 aaKnown RBP8.91□□□□□ -0.98
SMAD3-211ENST00000559460 ERGP11308 486 aa8.91□□□□□ -0.98
SMAD3-211ENST00000559460 CHRM3P20309 590 aa8.91□□□□□ -0.98
SMAD3-211ENST00000559460 CRYGSP22914 178 aa8.91□□□□□ -0.98
SMAD3-211ENST00000559460 GDF1P27539 372 aa8.91□□□□□ -0.98
SMAD3-211ENST00000559460 RBL1P28749 1068 aa8.91□□□□□ -0.98
SMAD3-211ENST00000559460 CYLC1P35663 651 aaPredicted RBP8.91□□□□□ -0.98
SMAD3-211ENST00000559460 MC3RP41968 323 aa8.91□□□□□ -0.98
SMAD3-211ENST00000559460 RPS4XP62701 263 aaKnown RBP8.91□□□□□ -0.98
SMAD3-211ENST00000559460 OLR1P78380 273 aa8.91□□□□□ -0.98
SMAD3-211ENST00000559460 PRAMEP78395 509 aa8.91□□□□□ -0.98
SMAD3-211ENST00000559460 BTG2P78543 158 aa8.91□□□□□ -0.98
SMAD3-211ENST00000559460 SRSF2Q01130 221 aaKnown RBP8.91□□□□□ -0.98
SMAD3-211ENST00000559460 MSLNQ13421 630 aaPredicted RBP8.91□□□□□ -0.98
SMAD3-211ENST00000559460 BMPR2Q13873 1038 aa8.91□□□□□ -0.98
SMAD3-211ENST00000559460 CAPRIN1Q14444 709 aaKnown RBP8.91□□□□□ -0.98
SMAD3-211ENST00000559460 DEFB134Q4QY38 66 aa8.91□□□□□ -0.98
SMAD3-211ENST00000559460 C6orf52Q5T4I8 152 aa8.91□□□□□ -0.98
SMAD3-211ENST00000559460 E4F1Q66K89 784 aaPredicted RBP8.91□□□□□ -0.98
SMAD3-211ENST00000559460 MFSD7Q6UXD7 560 aa8.91□□□□□ -0.98
SMAD3-211ENST00000559460 VN1R4Q7Z5H5 301 aa8.91□□□□□ -0.98
SMAD3-211ENST00000559460 RASGEF1CQ8N431 466 aa8.91□□□□□ -0.98
SMAD3-211ENST00000559460 PPFIBP2Q8ND30 876 aa8.91□□□□□ -0.98
SMAD3-211ENST00000559460 MBD3L2Q8NHZ7 208 aaPredicted RBP8.91□□□□□ -0.98
SMAD3-211ENST00000559460 UCN3Q969E3 161 aa8.91□□□□□ -0.98
SMAD3-211ENST00000559460 GTPBP3Q969Y2 492 aaKnown RBP8.91□□□□□ -0.98
SMAD3-211ENST00000559460 SCYL1Q96KG9 808 aa8.91□□□□□ -0.98
SMAD3-211ENST00000559460 ZFP3Q96NJ6 502 aa8.91□□□□□ -0.98
SMAD3-211ENST00000559460 FAM111AQ96PZ2 611 aa8.91□□□□□ -0.98
SMAD3-211ENST00000559460 SLC30A3Q99726 388 aa8.91□□□□□ -0.98
SMAD3-211ENST00000559460 GORASP1Q9BQQ3 440 aa8.91□□□□□ -0.98
SMAD3-211ENST00000559460 RHBGQ9H310 441 aa8.91□□□□□ -0.98
SMAD3-211ENST00000559460 ZFP64Q9NPA5 681 aa8.91□□□□□ -0.98
SMAD3-211ENST00000559460 ACKR4Q9NPB9 350 aa8.91□□□□□ -0.98
SMAD3-211ENST00000559460 PCDHA13Q9Y5I0 950 aa8.91□□□□□ -0.98
SMAD3-211ENST00000559460 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP8.91□□□□□ -0.98
SMAD3-211ENST00000559460 KCNE1BA0A087WTH5 132 aa8.9□□□□□ -0.98
SMAD3-211ENST00000559460 A0A0G2JK05 382 aa8.9□□□□□ -0.98
SMAD3-211ENST00000559460 DEFB108AA8MXU0 73 aa8.9□□□□□ -0.98
SMAD3-211ENST00000559460 KDM4EB2RXH2 506 aaPredicted RBP8.9□□□□□ -0.98
SMAD3-211ENST00000559460 UBFD1O14562 309 aaKnown RBP8.9□□□□□ -0.98
SMAD3-211ENST00000559460 SNPHO15079 494 aa8.9□□□□□ -0.98
SMAD3-211ENST00000559460 GOT2P00505 430 aaKnown RBP8.9□□□□□ -0.98
SMAD3-211ENST00000559460 PGRP06401 933 aa8.9□□□□□ -0.98
SMAD3-211ENST00000559460 CCL3P10147 92 aa8.9□□□□□ -0.98
SMAD3-211ENST00000559460 RNH1P13489 461 aaKnown RBP8.9□□□□□ -0.98
SMAD3-211ENST00000559460 PIGAP37287 484 aa8.9□□□□□ -0.98
SMAD3-211ENST00000559460 DUSP8Q13202 625 aa8.9□□□□□ -0.98
SMAD3-211ENST00000559460 PDLIM3Q53GG5 364 aaPredicted RBP8.9□□□□□ -0.98
SMAD3-211ENST00000559460 XKR6Q5GH73 641 aa8.9□□□□□ -0.98
SMAD3-211ENST00000559460 UBAP2Q5T6F2 1119 aaKnown RBP8.9□□□□□ -0.98
SMAD3-211ENST00000559460 DENND5AQ6IQ26 1287 aa8.9□□□□□ -0.98
SMAD3-211ENST00000559460 CAPN13Q6MZZ7 669 aaPredicted RBP8.9□□□□□ -0.98
SMAD3-211ENST00000559460 HSDL2Q6YN16 418 aa8.9□□□□□ -0.98
SMAD3-211ENST00000559460 CDKL3Q8IVW4 592 aaPredicted RBP8.9□□□□□ -0.98
SMAD3-211ENST00000559460 PPHLN1Q8NEY8 458 aaKnown RBP8.9□□□□□ -0.98
SMAD3-211ENST00000559460 SGMS2Q8NHU3 365 aa8.9□□□□□ -0.98
SMAD3-211ENST00000559460 GABPB2Q8TAK5 448 aaPredicted RBP8.9□□□□□ -0.98
SMAD3-211ENST00000559460 SREK1Q8WXA9 508 aaKnown RBP8.9□□□□□ -0.98
SMAD3-211ENST00000559460 PDLIM2Q96JY6 352 aa8.9□□□□□ -0.98
SMAD3-211ENST00000559460 QRFPRQ96P65 431 aa8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms