RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 A0A1W2PQU0 124 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 A0A1W2PRB8 838 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 TBC1D3FA6NER0 549 aaPredicted RBP10.15□□□□□ -0.78
CUX1-217ENST00000558836 TRIM64A6NGJ6 449 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 GLOD5A6NK44 160 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 TBC1D3LB9A6J9 549 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 J3KTA2 159 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 K7EQS6 105 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 RNASET2O00584 256 aaKnown RBP10.15□□□□□ -0.78
CUX1-217ENST00000558836 PRKRAO75569 313 aaKnown RBP10.15□□□□□ -0.78
CUX1-217ENST00000558836 POU2F2P09086 479 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 TBC1D3HP0C7X1 549 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 MATN1P21941 496 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 ISL1P61371 349 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 KCNJ10P78508 379 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 HYAL1Q12794 435 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 CLCA4Q14CN2 919 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 C6orf141Q5SZD1 244 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 TBC1D3GQ6DHY5 549 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 FAM71E1Q6IPT2 247 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 TBC1D3CQ6IPX1 549 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 SHQ1Q6PI26 577 aaKnown RBP10.15□□□□□ -0.78
CUX1-217ENST00000558836 UNC5DQ6UXZ4 953 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 EIF3MQ7L2H7 374 aaKnown RBP10.15□□□□□ -0.78
CUX1-217ENST00000558836 SLC9B2Q86UD5 537 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 HIPK1Q86Z02 1210 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.15□□□□□ -0.78
CUX1-217ENST00000558836 TBC1D3Q8IZP1 549 aaPredicted RBP10.15□□□□□ -0.78
CUX1-217ENST00000558836 PJA1Q8NG27 643 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 RAB7BQ96AH8 199 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 OTUB1Q96FW1 271 aaPredicted RBP10.15□□□□□ -0.78
CUX1-217ENST00000558836 SLAMF7Q9NQ25 335 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 PAK1IP1Q9NWT1 392 aaPredicted RBP10.15□□□□□ -0.78
CUX1-217ENST00000558836 THUMPD1Q9NXG2 353 aaKnown RBP10.15□□□□□ -0.78
CUX1-217ENST00000558836 SH3GLB1Q9Y371 365 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 SCN2AQ99250 2005 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 COL6A3P12111 3177 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 PDZK1P1A8MUH7 402 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 BCKDKO14874 412 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 HPRP00739 348 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 HTR1AP08908 422 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 LAMP2P13473 410 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 PTX3P26022 381 aaPredicted RBP10.15□□□□□ -0.78
CUX1-217ENST00000558836 RRM2P31350 389 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 SLC19A1P41440 591 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 STT3AP46977 705 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 DGKEP52429 567 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 MAPK12P53778 367 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 CLDN2P57739 230 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 SGCGQ13326 291 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 KRT33BQ14525 404 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 CYP2A13Q16696 494 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 ITPRIPL2Q3MIP1 535 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 LAIR1Q6GTX8 287 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 TNFAIP8L2Q6P589 184 aaPredicted RBP10.15□□□□□ -0.78
CUX1-217ENST00000558836 SZRD1Q7Z422 152 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 MENTQ9BUN1 341 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 TRMT61BQ9BVS5 477 aaKnown RBP10.15□□□□□ -0.78
CUX1-217ENST00000558836 ASPSCR1Q9BZE9 553 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 BHLHE41Q9C0J9 482 aaPredicted RBP10.15□□□□□ -0.78
CUX1-217ENST00000558836 SLC28A3Q9HAS3 691 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 TRPV4Q9HBA0 871 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 PRDM8Q9NQV8 689 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 KIF17Q9P2E2 1029 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 ZNF282Q9UDV7 671 aaPredicted RBP10.15□□□□□ -0.78
CUX1-217ENST00000558836 ORC6Q9Y5N6 252 aa10.15□□□□□ -0.78
CUX1-217ENST00000558836 A0A1W2PPV9 198 aa10.14□□□□□ -0.79
CUX1-217ENST00000558836 H0Y8X5 98 aa10.14□□□□□ -0.79
CUX1-217ENST00000558836 ZBTB11O95625 1053 aaPredicted RBP10.14□□□□□ -0.79
CUX1-217ENST00000558836 POU2F1P14859 743 aa10.14□□□□□ -0.79
CUX1-217ENST00000558836 CLK3P49761 638 aaKnown RBP10.14□□□□□ -0.79
CUX1-217ENST00000558836 ARHGDIAP52565 204 aa10.14□□□□□ -0.79
CUX1-217ENST00000558836 C21orf58P58505 322 aa10.14□□□□□ -0.79
CUX1-217ENST00000558836 HSPB3Q12988 150 aa10.14□□□□□ -0.79
CUX1-217ENST00000558836 ERICH5Q6P6B1 374 aa10.14□□□□□ -0.79
CUX1-217ENST00000558836 LCTLQ6UWM7 567 aa10.14□□□□□ -0.79
CUX1-217ENST00000558836 TSEN54Q7Z6J9 526 aaKnown RBP10.14□□□□□ -0.79
CUX1-217ENST00000558836 HMGN2P46Q86SG4 172 aa10.14□□□□□ -0.79
CUX1-217ENST00000558836 LSRQ86X29 649 aaPredicted RBP10.14□□□□□ -0.79
CUX1-217ENST00000558836 KRT78Q8N1N4 520 aa10.14□□□□□ -0.79
CUX1-217ENST00000558836 C11orf65Q8NCR3 313 aa10.14□□□□□ -0.79
CUX1-217ENST00000558836 STARD8Q92502 1023 aa10.14□□□□□ -0.79
CUX1-217ENST00000558836 EXOSC8Q96B26 276 aaKnown RBP10.14□□□□□ -0.79
CUX1-217ENST00000558836 TRIT1Q9H3H1 467 aaKnown RBP10.14□□□□□ -0.79
CUX1-217ENST00000558836 EHD1Q9H4M9 534 aa10.14□□□□□ -0.79
CUX1-217ENST00000558836 CXorf36Q9H7Y0 433 aa10.14□□□□□ -0.79
CUX1-217ENST00000558836 REEP1Q9H902 201 aa10.14□□□□□ -0.79
CUX1-217ENST00000558836 TM9SF3Q9HD45 589 aa10.14□□□□□ -0.79
CUX1-217ENST00000558836 TUBA8Q9NY65 449 aaPredicted RBP10.14□□□□□ -0.79
CUX1-217ENST00000558836 USE1Q9NZ43 259 aa10.14□□□□□ -0.79
CUX1-217ENST00000558836 LMCD1Q9NZU5 365 aa10.14□□□□□ -0.79
CUX1-217ENST00000558836 RHCGQ9UBD6 479 aa10.14□□□□□ -0.79
CUX1-217ENST00000558836 ATP6V1HQ9UI12 483 aa10.14□□□□□ -0.79
CUX1-217ENST00000558836 A0A1W2PPW3 197 aa10.14□□□□□ -0.79
CUX1-217ENST00000558836 PRAMEF25A6NGN4 478 aa10.14□□□□□ -0.79
CUX1-217ENST00000558836 TRIM64CA6NLI5 447 aa10.14□□□□□ -0.79
CUX1-217ENST00000558836 GPR37L1O60883 481 aa10.14□□□□□ -0.79
CUX1-217ENST00000558836 ALPPL2P10696 532 aa10.14□□□□□ -0.79
CUX1-217ENST00000558836 SCARB2Q14108 478 aa10.14□□□□□ -0.79
CUX1-217ENST00000558836 RPS26P11Q5JNZ5 115 aaPredicted RBP10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms