RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 LRRC32Q14392 662 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 SPHARQ15513 63 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 SSX1Q16384 188 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 CLEC12AQ5QGZ9 265 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 ATAT1Q5SQI0 421 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 KIAA1841Q6NSI8 718 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 TUBA3EQ6PEY2 450 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 CD300LGQ6UXG3 332 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 CALHM3Q86XJ0 350 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 ASB15Q8WXK1 588 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 TMED9Q9BVK6 235 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 C1QTNF3Q9BXJ4 246 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 RACGAP1Q9H0H5 632 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 MCUBQ9NWR8 336 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 IL20RAQ9UHF4 553 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 TMCC3Q9ULS5 477 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 CMAHPQ9Y471 501 aa10.89□□□□□ -0.67
LDLR-208ENST00000558518 TRBC2A0A5B9 178 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 E7EQ34 232 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 OR2B3O76000 313 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 ALX3O95076 343 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 CCR7P32248 378 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 GPC1P35052 558 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 CSKP41240 450 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 PRKAG1P54619 331 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 C1DQ13901 141 aaKnown RBP10.88□□□□□ -0.67
LDLR-208ENST00000558518 TATDN3Q17R31 274 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 WSCD2Q2TBF2 565 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 FLYWCH1Q4VC44 716 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 BCL7BQ9BQE9 202 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 DNAJC11Q9NVH1 559 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 ATP6V1HQ9UI12 483 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 C2orf78A6NCI8 922 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 ISM1B1AKI9 464 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 PLK4O00444 970 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 SEPT4O43236 478 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 TOXO94900 526 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 CELF2O95319 508 aaKnown RBP10.88□□□□□ -0.67
LDLR-208ENST00000558518 AMD1P17707 334 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 CSNK1DP48730 415 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 STK19P49842 368 aaPredicted RBP10.88□□□□□ -0.67
LDLR-208ENST00000558518 TARDBPQ13148 414 aaKnown RBP eCLIP10.88□□□□□ -0.67
LDLR-208ENST00000558518 ZNF267Q14586 743 aaPredicted RBP10.88□□□□□ -0.67
LDLR-208ENST00000558518 RGNQ15493 299 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 TJAP1Q5JTD0 557 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 MTFR2Q6P444 385 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 MMP21Q8N119 569 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 LILRA3Q8N6C8 439 aaPredicted RBP10.88□□□□□ -0.67
LDLR-208ENST00000558518 SLC7A6Q92536 515 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 MCCC1Q96RQ3 725 aaPredicted RBP10.88□□□□□ -0.67
LDLR-208ENST00000558518 ZIC5Q96T25 663 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 SORBS1Q9BX66 1292 aaKnown RBP10.88□□□□□ -0.67
LDLR-208ENST00000558518 HDHD5Q9BXW7 423 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 GALNT9Q9HCQ5 603 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 PRAMEF33A0A0G2JMD5 474 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 PIPSLA2A3N6 862 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 I3L521 148 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 TLR4O00206 839 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 TSPAN4O14817 238 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 KDELR3O43731 214 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 PRAMEF10O60809 474 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 SLC2A2P11168 524 aaPredicted RBP10.88□□□□□ -0.67
LDLR-208ENST00000558518 GZMMP51124 257 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 INSL4Q14641 139 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 SNAPC1Q16533 368 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 SYTL3Q4VX76 610 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 DDI2Q5TDH0 399 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 LHFPL3Q86UP9 236 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 ZDHHC6Q9H6R6 413 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 PDFQ9HBH1 243 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 POFUT2Q9Y2G5 429 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 HSPE1-MOB4S4R3N1 261 aa10.88□□□□□ -0.67
LDLR-208ENST00000558518 SPTBP11277 2137 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 TSC2P49815 1807 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 CENPBD1B2RD01 187 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 TEX46H3BTG2 121 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 ETHE1O95571 254 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 DDX5P17844 614 aaKnown RBP10.87□□□□□ -0.67
LDLR-208ENST00000558518 CHMP24386 653 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 GSTM5P46439 218 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 BDKRB1P46663 353 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 SMAD3P84022 425 aaKnown RBP10.87□□□□□ -0.67
LDLR-208ENST00000558518 MLLT1Q03111 559 aaPredicted RBP10.87□□□□□ -0.67
LDLR-208ENST00000558518 C2orf80Q0P641 193 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 CCSMST1Q4G0I0 132 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 RSPO2Q6UXX9 243 aaPredicted RBP10.87□□□□□ -0.67
LDLR-208ENST00000558518 WDR53Q7Z5U6 358 aaPredicted RBP10.87□□□□□ -0.67
LDLR-208ENST00000558518 CDH24Q86UP0 819 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 RBM45Q8IUH3 476 aaKnown RBP10.87□□□□□ -0.67
LDLR-208ENST00000558518 APCDD1Q8J025 514 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 NATD1Q8N6N6 113 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 GPR26Q8NDV2 337 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 BRD9Q9H8M2 597 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 NMNAT1Q9HAN9 279 aaPredicted RBP10.87□□□□□ -0.67
LDLR-208ENST00000558518 NKIRAS2Q9NYR9 191 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 TRPS1Q9UHF7 1281 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 RIMKLBQ9ULI2 386 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 PCDHB11Q9Y5F2 797 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 ARID1AO14497 2285 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 TRBV5-3A0A0A0MS03 114 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms