RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 SPHK2Q9NRA0 654 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 C1GALT1Q9NS00 363 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 DSCR3O14972 297 aa12.34□□□□□ -0.43
LDLR-207ENST00000558013 COL9A2Q14055 689 aaPredicted RBP12.34□□□□□ -0.43
LDLR-207ENST00000558013 ZDHHC20Q5W0Z9 365 aa12.34□□□□□ -0.43
LDLR-207ENST00000558013 LILRA6Q6PI73 481 aa12.34□□□□□ -0.43
LDLR-207ENST00000558013 SLC39A5Q6ZMH5 540 aa12.34□□□□□ -0.43
LDLR-207ENST00000558013 OR4C15Q8NGM1 316 aa12.34□□□□□ -0.43
LDLR-207ENST00000558013 PHF10Q8WUB8 498 aaKnown RBP12.34□□□□□ -0.43
LDLR-207ENST00000558013 ING5Q8WYH8 240 aa12.34□□□□□ -0.43
LDLR-207ENST00000558013 OR5M11Q96RB7 305 aa12.34□□□□□ -0.43
LDLR-207ENST00000558013 YME1L1Q96TA2 773 aa12.34□□□□□ -0.43
LDLR-207ENST00000558013 WFDC6Q9BQY6 131 aa12.34□□□□□ -0.43
LDLR-207ENST00000558013 CHCHD6Q9BRQ6 235 aa12.34□□□□□ -0.43
LDLR-207ENST00000558013 REEP4Q9H6H4 257 aa12.34□□□□□ -0.43
LDLR-207ENST00000558013 MS4A12Q9NXJ0 267 aa12.34□□□□□ -0.43
LDLR-207ENST00000558013 OGDHLQ9ULD0 1010 aa12.34□□□□□ -0.43
LDLR-207ENST00000558013 CFAP20Q9Y6A4 193 aaKnown RBP12.34□□□□□ -0.43
LDLR-207ENST00000558013 NOTCH4Q99466 2003 aa12.34□□□□□ -0.43
LDLR-207ENST00000558013 CLCA1A8K7I4 914 aa12.34□□□□□ -0.43
LDLR-207ENST00000558013 MOSPD3O75425 235 aa12.34□□□□□ -0.43
LDLR-207ENST00000558013 RECKO95980 971 aa12.34□□□□□ -0.43
LDLR-207ENST00000558013 FURINP09958 794 aa12.34□□□□□ -0.43
LDLR-207ENST00000558013 ZNF30P17039 623 aa12.34□□□□□ -0.43
LDLR-207ENST00000558013 POLR2EP19388 210 aaKnown RBP12.34□□□□□ -0.43
LDLR-207ENST00000558013 CD40LGP29965 261 aa12.34□□□□□ -0.43
LDLR-207ENST00000558013 ASMTP46597 345 aa12.34□□□□□ -0.43
LDLR-207ENST00000558013 PRLHRP49683 370 aa12.34□□□□□ -0.43
LDLR-207ENST00000558013 ZNF763Q0D2J5 394 aa12.34□□□□□ -0.43
LDLR-207ENST00000558013 PLEKHG7Q6ZR37 379 aa12.34□□□□□ -0.43
LDLR-207ENST00000558013 NEK10Q6ZWH5 1172 aa12.34□□□□□ -0.43
LDLR-207ENST00000558013 PARS2Q7L3T8 475 aaKnown RBP12.34□□□□□ -0.43
LDLR-207ENST00000558013 HMGN2P46Q86SG4 172 aa12.34□□□□□ -0.43
LDLR-207ENST00000558013 SFTPA1Q8IWL2 248 aa12.34□□□□□ -0.43
LDLR-207ENST00000558013 ZNF675Q8TD23 568 aa12.34□□□□□ -0.43
LDLR-207ENST00000558013 FAM210AQ96ND0 272 aa12.34□□□□□ -0.43
LDLR-207ENST00000558013 ZSCAN5AQ9BUG6 496 aa12.34□□□□□ -0.43
LDLR-207ENST00000558013 CEP44Q9C0F1 390 aa12.34□□□□□ -0.43
LDLR-207ENST00000558013 RNF208Q9H0X6 261 aa12.34□□□□□ -0.43
LDLR-207ENST00000558013 BRF2Q9HAW0 419 aa12.34□□□□□ -0.43
LDLR-207ENST00000558013 CCNB1IP1Q9NPC3 277 aa12.34□□□□□ -0.43
LDLR-207ENST00000558013 SCHIP1Q9P0W5 487 aaPredicted RBP12.34□□□□□ -0.43
LDLR-207ENST00000558013 PIPSLA2A3N6 862 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 RNASET2O00584 256 aaKnown RBP12.33□□□□□ -0.44
LDLR-207ENST00000558013 CYP2A6P11509 494 aaPredicted RBP12.33□□□□□ -0.44
LDLR-207ENST00000558013 CHI3L1P36222 383 aaPredicted RBP12.33□□□□□ -0.44
LDLR-207ENST00000558013 RAB15P59190 212 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 ERVFC1P60507 584 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 KCNC3Q14003 757 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 SPIN4Q56A73 249 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 CNKSR3Q6P9H4 555 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 OLIG3Q7RTU3 272 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 C16orf78Q8WTQ4 265 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 ATL1Q8WXF7 558 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 S100ZQ8WXG8 99 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 DACH2Q96NX9 599 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 LRRC3BQ96PB8 259 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 SLC6A16Q9GZN6 736 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 ZBP1Q9H171 429 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 ACER3Q9NUN7 267 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 TDP1Q9NUW8 608 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 PLXND1Q9Y4D7 1925 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 SOD1P00441 154 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 GASTP01350 101 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 CDK1P06493 297 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 IL3P08700 152 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 ADORA3P0DMS8 318 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 SPNP16150 400 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 PTGER1P34995 402 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 SERPINB10P48595 397 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 C21orf58P58505 322 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 CDK6Q00534 326 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 NFE2L1Q14494 772 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 MICAQ29983 383 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 IFI44LQ53G44 452 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 TCEAL5Q5H9L2 206 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 GCNT6Q5T4J0 391 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 ANXA8L1Q5VT79 327 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 TRMT11Q7Z4G4 463 aaKnown RBP12.33□□□□□ -0.44
LDLR-207ENST00000558013 BCDIN3DQ7Z5W3 292 aaKnown RBP12.33□□□□□ -0.44
LDLR-207ENST00000558013 B3GNT7Q8NFL0 401 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 IPCEF1Q8WWN9 437 aaPredicted RBP12.33□□□□□ -0.44
LDLR-207ENST00000558013 UCN3Q969E3 161 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 PPCDCQ96CD2 204 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 IL4I1Q96RQ9 567 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 FAM129BQ96TA1 746 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 DMRT3Q9NQL9 472 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 SNX11Q9Y5W9 270 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 DENND4CQ5VZ89 1909 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 KIAA0100Q14667 2235 aaKnown RBP12.33□□□□□ -0.44
LDLR-207ENST00000558013 WASHC1A8K0Z3 465 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 WASH3PC4AMC7 463 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 AGRPO00253 132 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 RFXAPO00287 272 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 AQP9O43315 295 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 SEMA7AO75326 666 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 AP2A2O94973 939 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 GABRB1P18505 474 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 LAG3P18627 525 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 EIF2DP41214 584 aaKnown RBP12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms