RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	CTAG2	O75638	210 aa		11.79	□□□□□ -0.52
SHMT2-223	ENST00000556689	MYO1D	O94832	1006 aa		11.79	□□□□□ -0.52
SHMT2-223	ENST00000556689	RNH1	P13489	461 aa	Known RBP	11.79	□□□□□ -0.52
SHMT2-223	ENST00000556689	ACVR2A	P27037	513 aa		11.79	□□□□□ -0.52
SHMT2-223	ENST00000556689	SLC1A2	P43004	574 aa		11.79	□□□□□ -0.52
SHMT2-223	ENST00000556689	ZFP36L2	P47974	494 aa	Known RBP	11.79	□□□□□ -0.52
SHMT2-223	ENST00000556689	RGS4	P49798	205 aa		11.79	□□□□□ -0.52
SHMT2-223	ENST00000556689	SSR4	P51571	173 aa		11.79	□□□□□ -0.52
SHMT2-223	ENST00000556689	NR0B1	P51843	470 aa	Known RBP	11.79	□□□□□ -0.52
SHMT2-223	ENST00000556689	RAB8A	P61006	207 aa		11.79	□□□□□ -0.52
SHMT2-223	ENST00000556689	PLGLB1	Q02325	96 aa		11.79	□□□□□ -0.52
SHMT2-223	ENST00000556689	HYAL2	Q12891	473 aa		11.79	□□□□□ -0.52
SHMT2-223	ENST00000556689	CSHL1	Q14406	222 aa		11.79	□□□□□ -0.52
SHMT2-223	ENST00000556689	DUPD1	Q68J44	220 aa		11.79	□□□□□ -0.52
SHMT2-223	ENST00000556689	ZNF585A	Q6P3V2	769 aa		11.79	□□□□□ -0.52
SHMT2-223	ENST00000556689	ARSK	Q6UWY0	536 aa		11.79	□□□□□ -0.52
SHMT2-223	ENST00000556689	RGS9BP	Q6ZS82	235 aa		11.79	□□□□□ -0.52
SHMT2-223	ENST00000556689	CAND1	Q86VP6	1230 aa	Known RBP	11.79	□□□□□ -0.52
SHMT2-223	ENST00000556689	GPALPP1	Q8IXQ4	340 aa		11.79	□□□□□ -0.52
SHMT2-223	ENST00000556689	LMNTD2	Q8IXW0	634 aa		11.79	□□□□□ -0.52
SHMT2-223	ENST00000556689	OR5M9	Q8NGP3	310 aa		11.79	□□□□□ -0.52
SHMT2-223	ENST00000556689	CREB3L4	Q8TEY5	395 aa		11.79	□□□□□ -0.52
SHMT2-223	ENST00000556689	MAIP1	Q8WWC4	291 aa		11.79	□□□□□ -0.52
SHMT2-223	ENST00000556689	CCDC77	Q9BR77	488 aa		11.79	□□□□□ -0.52
SHMT2-223	ENST00000556689	TTYH2	Q9BSA4	534 aa		11.79	□□□□□ -0.52
SHMT2-223	ENST00000556689	POLDIP3	Q9BY77	421 aa	Known RBP	11.79	□□□□□ -0.52
SHMT2-223	ENST00000556689	LZTFL1	Q9NQ48	299 aa		11.79	□□□□□ -0.52
SHMT2-223	ENST00000556689	PNPLA3	Q9NST1	481 aa		11.79	□□□□□ -0.52
SHMT2-223	ENST00000556689	ST6GALNAC2	Q9UJ37	374 aa		11.79	□□□□□ -0.52
SHMT2-223	ENST00000556689	ZFP69B	Q9UJL9	534 aa		11.79	□□□□□ -0.52
SHMT2-223	ENST00000556689	FBXO5	Q9UKT4	447 aa		11.79	□□□□□ -0.52
SHMT2-223	ENST00000556689	ERVK-11	Q9UQG0	969 aa		11.79	□□□□□ -0.52
SHMT2-223	ENST00000556689	PRRC2A	P48634	2157 aa	Known RBP	11.79	□□□□□ -0.52
SHMT2-223	ENST00000556689	ZCWPW2	A0A1B0GU75	182 aa		11.78	□□□□□ -0.52
SHMT2-223	ENST00000556689	OR14I1	A6ND48	311 aa		11.78	□□□□□ -0.52
SHMT2-223	ENST00000556689	FIGNL2	A6NMB9	653 aa		11.78	□□□□□ -0.52
SHMT2-223	ENST00000556689		A8MVJ9	347 aa		11.78	□□□□□ -0.52
SHMT2-223	ENST00000556689	KIF2A	O00139	706 aa	Predicted RBP	11.78	□□□□□ -0.52
SHMT2-223	ENST00000556689	BCKDK	O14874	412 aa		11.78	□□□□□ -0.52
SHMT2-223	ENST00000556689	ZFAND5	O76080	213 aa		11.78	□□□□□ -0.52
SHMT2-223	ENST00000556689	SMIM10L1	P0DMW3	83 aa		11.78	□□□□□ -0.52
SHMT2-223	ENST00000556689	AHR	P35869	848 aa		11.78	□□□□□ -0.52
SHMT2-223	ENST00000556689	HNF4A	P41235	474 aa		11.78	□□□□□ -0.52
SHMT2-223	ENST00000556689	SCTR	P47872	440 aa		11.78	□□□□□ -0.52
SHMT2-223	ENST00000556689	DLX5	P56178	289 aa		11.78	□□□□□ -0.52
SHMT2-223	ENST00000556689	SP140	Q13342	867 aa		11.78	□□□□□ -0.52
SHMT2-223	ENST00000556689	TRIP13	Q15645	432 aa	Predicted RBP	11.78	□□□□□ -0.52
SHMT2-223	ENST00000556689	CEBPE	Q15744	281 aa		11.78	□□□□□ -0.52
SHMT2-223	ENST00000556689	KCTD19	Q17RG1	926 aa	Predicted RBP	11.78	□□□□□ -0.52
SHMT2-223	ENST00000556689	CATSPERE	Q5SY80	951 aa		11.78	□□□□□ -0.52
SHMT2-223	ENST00000556689	HECTD2	Q5U5R9	776 aa		11.78	□□□□□ -0.52
SHMT2-223	ENST00000556689	SLC22A16	Q86VW1	577 aa		11.78	□□□□□ -0.52
SHMT2-223	ENST00000556689	MYO1H	Q8N1T3	1032 aa		11.78	□□□□□ -0.52
SHMT2-223	ENST00000556689	PSD4	Q8NDX1	1056 aa		11.78	□□□□□ -0.52
SHMT2-223	ENST00000556689	TRPV3	Q8NET8	790 aa		11.78	□□□□□ -0.52
SHMT2-223	ENST00000556689	OR2M7	Q8NG81	312 aa		11.78	□□□□□ -0.52
SHMT2-223	ENST00000556689	PYCR2	Q96C36	320 aa		11.78	□□□□□ -0.52
SHMT2-223	ENST00000556689	VMP1	Q96GC9	406 aa		11.78	□□□□□ -0.52
SHMT2-223	ENST00000556689	SMIM10	Q96HG1	83 aa		11.78	□□□□□ -0.52
SHMT2-223	ENST00000556689	OR4K3	Q96R72	315 aa		11.78	□□□□□ -0.52
SHMT2-223	ENST00000556689	LIME1	Q9H400	295 aa		11.78	□□□□□ -0.52
SHMT2-223	ENST00000556689	ZDHHC11	Q9H8X9	412 aa		11.78	□□□□□ -0.52
SHMT2-223	ENST00000556689	PNO1	Q9NRX1	252 aa	Known RBP	11.78	□□□□□ -0.52
SHMT2-223	ENST00000556689	DEPP	Q9NTK1	212 aa		11.78	□□□□□ -0.52
SHMT2-223	ENST00000556689	C20orf96	Q9NUD7	363 aa	Predicted RBP	11.78	□□□□□ -0.52
SHMT2-223	ENST00000556689	HPF1	Q9NWY4	346 aa		11.78	□□□□□ -0.52
SHMT2-223	ENST00000556689	TAS2R13	Q9NYV9	303 aa		11.78	□□□□□ -0.52
SHMT2-223	ENST00000556689	PYCARD	Q9ULZ3	195 aa		11.78	□□□□□ -0.52
SHMT2-223	ENST00000556689	L3MBTL1	Q9Y468	752 aa		11.78	□□□□□ -0.52
SHMT2-223	ENST00000556689	HCFC1	P51610	2035 aa		11.77	□□□□□ -0.52
SHMT2-223	ENST00000556689	PINLYP	A6NC86	204 aa		11.77	□□□□□ -0.53
SHMT2-223	ENST00000556689	PABPN1L	A6NDY0	278 aa	Known RBP	11.77	□□□□□ -0.53
SHMT2-223	ENST00000556689	FAM166B	A8MTA8	275 aa		11.77	□□□□□ -0.53
SHMT2-223	ENST00000556689	GLI4	P10075	376 aa		11.77	□□□□□ -0.53
SHMT2-223	ENST00000556689	MLN	P12872	115 aa		11.77	□□□□□ -0.53
SHMT2-223	ENST00000556689	DRD2	P14416	443 aa		11.77	□□□□□ -0.53
SHMT2-223	ENST00000556689	FOSL1	P15407	271 aa		11.77	□□□□□ -0.53
SHMT2-223	ENST00000556689	DNASE1	P24855	282 aa		11.77	□□□□□ -0.53
SHMT2-223	ENST00000556689	MAGEA6	P43360	314 aa		11.77	□□□□□ -0.53
SHMT2-223	ENST00000556689	TIAL1	Q01085	375 aa	Known RBP eCLIP	11.77	□□□□□ -0.53
SHMT2-223	ENST00000556689	DHX9	Q08211	1270 aa	Known RBP	11.77	□□□□□ -0.53
SHMT2-223	ENST00000556689	FOXD4	Q12950	439 aa	Predicted RBP	11.77	□□□□□ -0.53
SHMT2-223	ENST00000556689	GPS1	Q13098	491 aa		11.77	□□□□□ -0.53
SHMT2-223	ENST00000556689	TERF2	Q15554	542 aa		11.77	□□□□□ -0.53
SHMT2-223	ENST00000556689	PHKG1	Q16816	387 aa		11.77	□□□□□ -0.53
SHMT2-223	ENST00000556689	XKR6	Q5GH73	641 aa		11.77	□□□□□ -0.53
SHMT2-223	ENST00000556689	PAQR3	Q6TCH7	311 aa		11.77	□□□□□ -0.53
SHMT2-223	ENST00000556689	IL20RB	Q6UXL0	311 aa		11.77	□□□□□ -0.53
SHMT2-223	ENST00000556689	B3GNT6	Q6ZMB0	384 aa		11.77	□□□□□ -0.53
SHMT2-223	ENST00000556689	ZNF662	Q6ZS27	426 aa		11.77	□□□□□ -0.53
SHMT2-223	ENST00000556689	LIX1L	Q8IVB5	337 aa		11.77	□□□□□ -0.53
SHMT2-223	ENST00000556689	ZZZ3	Q8IYH5	903 aa		11.77	□□□□□ -0.53
SHMT2-223	ENST00000556689	SERBP1	Q8NC51	408 aa	Known RBP eCLIP	11.77	□□□□□ -0.53
SHMT2-223	ENST00000556689	TRIM58	Q8NG06	486 aa		11.77	□□□□□ -0.53
SHMT2-223	ENST00000556689	OR56A3	Q8NH54	315 aa		11.77	□□□□□ -0.53
SHMT2-223	ENST00000556689	ASB15	Q8WXK1	588 aa		11.77	□□□□□ -0.53
SHMT2-223	ENST00000556689	NCLN	Q969V3	563 aa		11.77	□□□□□ -0.53
SHMT2-223	ENST00000556689	SMC6	Q96SB8	1091 aa		11.77	□□□□□ -0.53
SHMT2-223	ENST00000556689	TRIM54	Q9BYV2	358 aa		11.77	□□□□□ -0.53
SHMT2-223	ENST00000556689	GSX1	Q9H4S2	264 aa	Predicted RBP	11.77	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms