RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 AKAP7Q9P0M2 348 aaPredicted RBP10.67□□□□□ -0.7
SHMT2-216ENST00000554975 CD84Q9UIB8 345 aa10.67□□□□□ -0.7
SHMT2-216ENST00000554975 IKZF3Q9UKT9 509 aa10.67□□□□□ -0.7
SHMT2-216ENST00000554975 VPS4AQ9UN37 437 aa10.67□□□□□ -0.7
SHMT2-216ENST00000554975 TIMM22Q9Y584 194 aa10.67□□□□□ -0.7
SHMT2-216ENST00000554975 KCNMB2Q9Y691 235 aa10.67□□□□□ -0.7
SHMT2-216ENST00000554975 DGKBQ9Y6T7 804 aa10.67□□□□□ -0.7
SHMT2-216ENST00000554975 CSMD2Q7Z408 3487 aa10.67□□□□□ -0.7
SHMT2-216ENST00000554975 CROCCQ5TZA2 2017 aa10.67□□□□□ -0.7
SHMT2-216ENST00000554975 MED13LQ71F56 2210 aa10.66□□□□□ -0.7
SHMT2-216ENST00000554975 ZNF839A8K0R7 811 aa10.66□□□□□ -0.7
SHMT2-216ENST00000554975 EFCAB7A8K855 629 aa10.66□□□□□ -0.7
SHMT2-216ENST00000554975 PSMD11O00231 422 aa10.66□□□□□ -0.7
SHMT2-216ENST00000554975 LSM1O15116 133 aaKnown RBP10.66□□□□□ -0.7
SHMT2-216ENST00000554975 AKAP10O43572 662 aa10.66□□□□□ -0.7
SHMT2-216ENST00000554975 UGDHO60701 494 aa10.66□□□□□ -0.7
SHMT2-216ENST00000554975 STK16O75716 305 aa10.66□□□□□ -0.7
SHMT2-216ENST00000554975 CLDN7O95471 211 aa10.66□□□□□ -0.7
SHMT2-216ENST00000554975 FESP07332 822 aa10.66□□□□□ -0.7
SHMT2-216ENST00000554975 FURINP09958 794 aa10.66□□□□□ -0.7
SHMT2-216ENST00000554975 PABPC4LP0CB38 370 aaKnown RBP10.66□□□□□ -0.7
SHMT2-216ENST00000554975 ATP6V1B2P21281 511 aa10.66□□□□□ -0.7
SHMT2-216ENST00000554975 F8A1P23610 371 aa10.66□□□□□ -0.7
SHMT2-216ENST00000554975 GPR1P46091 355 aa10.66□□□□□ -0.7
SHMT2-216ENST00000554975 HNRNPFP52597 415 aaKnown RBP10.66□□□□□ -0.7
SHMT2-216ENST00000554975 KIAA1024LP59773 190 aa10.66□□□□□ -0.7
SHMT2-216ENST00000554975 TXNL4AP83876 142 aaKnown RBP10.66□□□□□ -0.7
SHMT2-216ENST00000554975 NR1D2Q14995 579 aa10.66□□□□□ -0.7
SHMT2-216ENST00000554975 DPY19L1Q2PZI1 675 aa10.66□□□□□ -0.7
SHMT2-216ENST00000554975 TIGD2Q4W5G0 525 aa10.66□□□□□ -0.7
SHMT2-216ENST00000554975 LIN52Q52LA3 116 aa10.66□□□□□ -0.7
SHMT2-216ENST00000554975 KRT80Q6KB66 452 aa10.66□□□□□ -0.7
SHMT2-216ENST00000554975 TCTN3Q6NUS6 607 aa10.66□□□□□ -0.7
SHMT2-216ENST00000554975 PNCKQ6P2M8 343 aa10.66□□□□□ -0.7
SHMT2-216ENST00000554975 CYP20A1Q6UW02 462 aa10.66□□□□□ -0.7
SHMT2-216ENST00000554975 ASB18Q6ZVZ8 466 aa10.66□□□□□ -0.7
SHMT2-216ENST00000554975 MAMDC2Q7Z304 686 aaPredicted RBP10.66□□□□□ -0.7
SHMT2-216ENST00000554975 HEATR4Q86WZ0 1026 aa10.66□□□□□ -0.7
SHMT2-216ENST00000554975 FAM129CQ86XR2 697 aa10.66□□□□□ -0.7
SHMT2-216ENST00000554975 NRROSQ86YC3 692 aa10.66□□□□□ -0.7
SHMT2-216ENST00000554975 ATL1Q8WXF7 558 aa10.66□□□□□ -0.7
SHMT2-216ENST00000554975 TMEM125Q96AQ2 219 aa10.66□□□□□ -0.7
SHMT2-216ENST00000554975 RHBDF1Q96CC6 855 aa10.66□□□□□ -0.7
SHMT2-216ENST00000554975 AP2M1Q96CW1 435 aa10.66□□□□□ -0.7
SHMT2-216ENST00000554975 DTD2Q96FN9 168 aa10.66□□□□□ -0.7
SHMT2-216ENST00000554975 METTL2AQ96IZ6 378 aaKnown RBP10.66□□□□□ -0.7
SHMT2-216ENST00000554975 APMAPQ9HDC9 416 aa10.66□□□□□ -0.7
SHMT2-216ENST00000554975 VCX3AQ9NNX9 186 aa10.66□□□□□ -0.7
SHMT2-216ENST00000554975 PRDM8Q9NQV8 689 aa10.66□□□□□ -0.7
SHMT2-216ENST00000554975 PNPLA3Q9NST1 481 aa10.66□□□□□ -0.7
SHMT2-216ENST00000554975 SNX6Q9UNH7 406 aa10.66□□□□□ -0.7
SHMT2-216ENST00000554975 TMED5Q9Y3A6 229 aa10.66□□□□□ -0.7
SHMT2-216ENST00000554975 POLR3HQ9Y535 204 aaPredicted RBP10.66□□□□□ -0.7
SHMT2-216ENST00000554975 PCDHA9Q9Y5H5 950 aa10.66□□□□□ -0.7
SHMT2-216ENST00000554975 ST14Q9Y5Y6 855 aa10.66□□□□□ -0.7
SHMT2-216ENST00000554975 NPIPB8E9PQR5 432 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 CAPN5O15484 640 aaPredicted RBP10.65□□□□□ -0.7
SHMT2-216ENST00000554975 RSL1D1O76021 490 aaKnown RBP10.65□□□□□ -0.7
SHMT2-216ENST00000554975 KCNH1O95259 989 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 CLDN9O95484 217 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 IL6P05231 212 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 PRPS2P11908 318 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 MYCLP1P12525 358 aaPredicted RBP10.65□□□□□ -0.7
SHMT2-216ENST00000554975 PRPH2P23942 346 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 CALRP27797 417 aaKnown RBP10.65□□□□□ -0.7
SHMT2-216ENST00000554975 GGT5P36269 586 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 GNPDA1P46926 289 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 HSPA7P48741 367 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 SPINT3P49223 89 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 GSK3BP49841 420 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 DIO3P55073 304 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 RPL38P63173 70 aaKnown RBP10.65□□□□□ -0.7
SHMT2-216ENST00000554975 MRPL49Q13405 166 aaKnown RBP10.65□□□□□ -0.7
SHMT2-216ENST00000554975 PWP1Q13610 501 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 GBX1Q14549 363 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 AP5B1Q2VPB7 878 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 C10orf62Q5T681 223 aaPredicted RBP10.65□□□□□ -0.7
SHMT2-216ENST00000554975 C1QL3Q5VWW1 255 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 PPP4R4Q6NUP7 873 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 DOK6Q6PKX4 331 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 ZBTB49Q6ZSB9 765 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 RFLNAQ6ZTI6 216 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 TRIM46Q7Z4K8 759 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 NRSN1Q8IZ57 195 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 NLGN4XQ8N0W4 816 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 LILRA2Q8N149 483 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 FAM156AQ8NDB6 213 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 AGBL5Q8NDL9 886 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 NLGN4YQ8NFZ3 816 aaPredicted RBP10.65□□□□□ -0.7
SHMT2-216ENST00000554975 OR52B6Q8NGF0 335 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 CPT1CQ8TCG5 803 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 ZFAND2BQ8WV99 257 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 SLC13A3Q8WWT9 602 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 TCTN2Q96GX1 697 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 CENPNQ96H22 339 aaPredicted RBP10.65□□□□□ -0.7
SHMT2-216ENST00000554975 NSMCE2Q96MF7 247 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 CCDC115Q96NT0 180 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 PHF12Q96QT6 1004 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 TMEM79Q9BSE2 394 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 ZSCAN5AQ9BUG6 496 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms