RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 ASIC5Q9NY37 505 aa13.8□□□□□ -0.2
SHMT2-208ENST00000553868 ARMCX1Q9P291 453 aa13.8□□□□□ -0.2
SHMT2-208ENST00000553868 G3BP2Q9UN86 482 aaKnown RBP13.8□□□□□ -0.2
SHMT2-208ENST00000553868 SLC12A4Q9UP95 1085 aa13.8□□□□□ -0.2
SHMT2-208ENST00000553868 CCL27Q9Y4X3 112 aa13.8□□□□□ -0.2
SHMT2-208ENST00000553868 COPG1Q9Y678 874 aaKnown RBP13.8□□□□□ -0.2
SHMT2-208ENST00000553868 AKAP9Q99996 3911 aa13.8□□□□□ -0.2
SHMT2-208ENST00000553868 A0A0J9YY10 115 aa13.79□□□□□ -0.2
SHMT2-208ENST00000553868 A0A1W2PQM1 296 aa13.79□□□□□ -0.2
SHMT2-208ENST00000553868 CAPN14A8MX76 684 aa13.79□□□□□ -0.2
SHMT2-208ENST00000553868 D6RAR5 112 aa13.79□□□□□ -0.2
SHMT2-208ENST00000553868 K7EM74 188 aa13.79□□□□□ -0.2
SHMT2-208ENST00000553868 PPM1DO15297 605 aa13.79□□□□□ -0.2
SHMT2-208ENST00000553868 NUDT21O43809 227 aaKnown RBP13.79□□□□□ -0.2
SHMT2-208ENST00000553868 SEC22BO75396 215 aa13.79□□□□□ -0.2
SHMT2-208ENST00000553868 MYO1DO94832 1006 aa13.79□□□□□ -0.2
SHMT2-208ENST00000553868 UBXN7O94888 489 aa13.79□□□□□ -0.2
SHMT2-208ENST00000553868 GLB1P16278 677 aa13.79□□□□□ -0.2
SHMT2-208ENST00000553868 PTX3P26022 381 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-208ENST00000553868 GPR3P46089 330 aa13.79□□□□□ -0.2
SHMT2-208ENST00000553868 MRPL19P49406 292 aaKnown RBP13.79□□□□□ -0.2
SHMT2-208ENST00000553868 HMGCS1Q01581 520 aa13.79□□□□□ -0.2
SHMT2-208ENST00000553868 BNIP1Q12981 228 aa13.79□□□□□ -0.2
SHMT2-208ENST00000553868 KLF10Q13118 480 aa13.79□□□□□ -0.2
SHMT2-208ENST00000553868 HERC3Q15034 1050 aa13.79□□□□□ -0.2
SHMT2-208ENST00000553868 LACTB2Q53H82 288 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-208ENST00000553868 SPIN4Q56A73 249 aa13.79□□□□□ -0.2
SHMT2-208ENST00000553868 ZNF425Q6IV72 752 aa13.79□□□□□ -0.2
SHMT2-208ENST00000553868 SPESP1Q6UW49 350 aa13.79□□□□□ -0.2
SHMT2-208ENST00000553868 MAMDC2Q7Z304 686 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-208ENST00000553868 SFTPA2Q8IWL1 248 aa13.79□□□□□ -0.2
SHMT2-208ENST00000553868 WDR48Q8TAF3 677 aa13.79□□□□□ -0.2
SHMT2-208ENST00000553868 ZUFSPQ96AP4 578 aa13.79□□□□□ -0.2
SHMT2-208ENST00000553868 THAP11Q96EK4 314 aa13.79□□□□□ -0.2
SHMT2-208ENST00000553868 NSL1Q96IY1 281 aa13.79□□□□□ -0.2
SHMT2-208ENST00000553868 GFM1Q96RP9 751 aaKnown RBP13.79□□□□□ -0.2
SHMT2-208ENST00000553868 MTERF1Q99551 399 aaKnown RBP13.79□□□□□ -0.2
SHMT2-208ENST00000553868 TBC1D10AQ9BXI6 508 aa13.79□□□□□ -0.2
SHMT2-208ENST00000553868 SLC6A20Q9NP91 592 aa13.79□□□□□ -0.2
SHMT2-208ENST00000553868 AIG1Q9NVV5 245 aa13.79□□□□□ -0.2
SHMT2-208ENST00000553868 AHSPQ9NZD4 102 aa13.79□□□□□ -0.2
SHMT2-208ENST00000553868 TAGLN3Q9UI15 199 aa13.79□□□□□ -0.2
SHMT2-208ENST00000553868 KLK4Q9Y5K2 254 aa13.79□□□□□ -0.2
SHMT2-208ENST00000553868 ESPL1Q14674 2120 aa13.79□□□□□ -0.2
SHMT2-208ENST00000553868 UNC13CQ8NB66 2214 aa13.79□□□□□ -0.2
SHMT2-208ENST00000553868 HIVEP3Q5T1R4 2406 aa13.78□□□□□ -0.2
SHMT2-208ENST00000553868 WIPF3A6NGB9 483 aa13.78□□□□□ -0.2
SHMT2-208ENST00000553868 MAGEB17A8MXT2 336 aa13.78□□□□□ -0.2
SHMT2-208ENST00000553868 PSMD12O00232 456 aaPredicted RBP13.78□□□□□ -0.2
SHMT2-208ENST00000553868 OR1F1O43749 312 aa13.78□□□□□ -0.2
SHMT2-208ENST00000553868 RPLP0P05388 317 aaKnown RBP13.78□□□□□ -0.2
SHMT2-208ENST00000553868 THRAP10827 490 aa13.78□□□□□ -0.2
SHMT2-208ENST00000553868 ESRRAP11474 423 aaPredicted RBP13.78□□□□□ -0.2
SHMT2-208ENST00000553868 PRPS2P11908 318 aa13.78□□□□□ -0.2
SHMT2-208ENST00000553868 LIFP15018 202 aa13.78□□□□□ -0.2
SHMT2-208ENST00000553868 CALB2P22676 271 aa13.78□□□□□ -0.2
SHMT2-208ENST00000553868 PIK3R1P27986 724 aa13.78□□□□□ -0.2
SHMT2-208ENST00000553868 AHRP35869 848 aa13.78□□□□□ -0.2
SHMT2-208ENST00000553868 GRIA3P42263 894 aa13.78□□□□□ -0.2
SHMT2-208ENST00000553868 CAPZBP47756 277 aa13.78□□□□□ -0.2
SHMT2-208ENST00000553868 SCTRP47872 440 aa13.78□□□□□ -0.2
SHMT2-208ENST00000553868 PPM1FP49593 454 aaPredicted RBP13.78□□□□□ -0.2
SHMT2-208ENST00000553868 RPS15AP62244 130 aaKnown RBP13.78□□□□□ -0.2
SHMT2-208ENST00000553868 RPS13P62277 151 aaKnown RBP13.78□□□□□ -0.2
SHMT2-208ENST00000553868 RPL38P63173 70 aaKnown RBP13.78□□□□□ -0.2
SHMT2-208ENST00000553868 MEF2AQ02078 507 aaPredicted RBP13.78□□□□□ -0.2
SHMT2-208ENST00000553868 RELAQ04206 551 aa13.78□□□□□ -0.2
SHMT2-208ENST00000553868 ACSM2AQ08AH3 577 aa13.78□□□□□ -0.2
SHMT2-208ENST00000553868 PDCD4Q53EL6 469 aaKnown RBP13.78□□□□□ -0.2
SHMT2-208ENST00000553868 ACSM2BQ68CK6 577 aa13.78□□□□□ -0.2
SHMT2-208ENST00000553868 TMPRSS9Q7Z410 1059 aa13.78□□□□□ -0.2
SHMT2-208ENST00000553868 TRPV3Q8NET8 790 aa13.78□□□□□ -0.2
SHMT2-208ENST00000553868 NAT6Q93015 286 aa13.78□□□□□ -0.2
SHMT2-208ENST00000553868 CCDC74AQ96AQ1 378 aa13.78□□□□□ -0.2
SHMT2-208ENST00000553868 MARK4Q96L34 752 aa13.78□□□□□ -0.2
SHMT2-208ENST00000553868 SARGQ9BW04 601 aa13.78□□□□□ -0.2
SHMT2-208ENST00000553868 ACTR5Q9H9F9 607 aaPredicted RBP13.78□□□□□ -0.2
SHMT2-208ENST00000553868 SDR39U1Q9NRG7 319 aaPredicted RBP13.78□□□□□ -0.2
SHMT2-208ENST00000553868 LRIT1Q9P2V4 623 aa13.78□□□□□ -0.2
SHMT2-208ENST00000553868 POMT2Q9UKY4 750 aa13.78□□□□□ -0.2
SHMT2-208ENST00000553868 PADI4Q9UM07 663 aa13.78□□□□□ -0.2
SHMT2-208ENST00000553868 VPS4AQ9UN37 437 aa13.78□□□□□ -0.2
SHMT2-208ENST00000553868 RUVBL1Q9Y265 456 aaKnown RBP13.78□□□□□ -0.2
SHMT2-208ENST00000553868 IGKV1-8A0A0C4DH67 115 aa13.77□□□□□ -0.21
SHMT2-208ENST00000553868 PDZD2O15018 2839 aa13.77□□□□□ -0.21
SHMT2-208ENST00000553868 NKX2-8O15522 239 aa13.77□□□□□ -0.21
SHMT2-208ENST00000553868 CLEC3AO75596 197 aa13.77□□□□□ -0.21
SHMT2-208ENST00000553868 SEMA3DO95025 777 aa13.77□□□□□ -0.21
SHMT2-208ENST00000553868 ALDOCP09972 364 aaKnown RBP13.77□□□□□ -0.21
SHMT2-208ENST00000553868 TYRP1P17643 537 aa13.77□□□□□ -0.21
SHMT2-208ENST00000553868 GPLD1P80108 840 aa13.77□□□□□ -0.21
SHMT2-208ENST00000553868 KLRB1Q12918 225 aa13.77□□□□□ -0.21
SHMT2-208ENST00000553868 CUL3Q13618 768 aa13.77□□□□□ -0.21
SHMT2-208ENST00000553868 RFTN2Q52LD8 501 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-208ENST00000553868 IL23RQ5VWK5 629 aa13.77□□□□□ -0.21
SHMT2-208ENST00000553868 FAM219BQ5XKK7 198 aa13.77□□□□□ -0.21
SHMT2-208ENST00000553868 FIGLAQ6QHK4 219 aa13.77□□□□□ -0.21
SHMT2-208ENST00000553868 ZNF438Q7Z4V0 828 aa13.77□□□□□ -0.21
SHMT2-208ENST00000553868 PAQR7Q86WK9 346 aa13.77□□□□□ -0.21
SHMT2-208ENST00000553868 ZNF761Q86XN6 746 aaPredicted RBP13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms