RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 ARHGAP40Q5TG30 622 aa20.08■□□□□ 0.81
VPS29-206ENST00000549578 RNF165Q6ZSG1 346 aa20.08■□□□□ 0.81
VPS29-206ENST00000549578 KIRREL3Q8IZU9 778 aa20.08■□□□□ 0.81
VPS29-206ENST00000549578 OR5T3Q8NGG3 340 aa20.08■□□□□ 0.81
VPS29-206ENST00000549578 COL26A1Q96A83 441 aa20.08■□□□□ 0.81
VPS29-206ENST00000549578 C3orf30Q96M34 536 aa20.08■□□□□ 0.81
VPS29-206ENST00000549578 TBCDQ9BTW9 1192 aa20.08■□□□□ 0.81
VPS29-206ENST00000549578 CHST8Q9H2A9 424 aa20.08■□□□□ 0.81
VPS29-206ENST00000549578 COPS7BQ9H9Q2 264 aaPredicted RBP20.08■□□□□ 0.81
VPS29-206ENST00000549578 NMRK1Q9NWW6 199 aa20.08■□□□□ 0.81
VPS29-206ENST00000549578 HCN3Q9P1Z3 774 aa20.08■□□□□ 0.81
VPS29-206ENST00000549578 PADI1Q9ULC6 663 aa20.08■□□□□ 0.81
VPS29-206ENST00000549578 H0YIG0 161 aa20.07■□□□□ 0.8
VPS29-206ENST00000549578 SLC28A1O00337 649 aa20.07■□□□□ 0.8
VPS29-206ENST00000549578 CCNYL3P0C7X3 344 aa20.07■□□□□ 0.8
VPS29-206ENST00000549578 AGXTP21549 392 aa20.07■□□□□ 0.8
VPS29-206ENST00000549578 FBLP22087 321 aaKnown RBP20.07■□□□□ 0.8
VPS29-206ENST00000549578 BSGP35613 385 aa20.07■□□□□ 0.8
VPS29-206ENST00000549578 MAP7Q14244 749 aa20.07■□□□□ 0.8
VPS29-206ENST00000549578 TGIF1Q15583 401 aa20.07■□□□□ 0.8
VPS29-206ENST00000549578 SYT16Q17RD7 645 aa20.07■□□□□ 0.8
VPS29-206ENST00000549578 AP5B1Q2VPB7 878 aa20.07■□□□□ 0.8
VPS29-206ENST00000549578 XKR7Q5GH72 579 aa20.07■□□□□ 0.8
VPS29-206ENST00000549578 OR4C11Q6IEV9 310 aa20.07■□□□□ 0.8
VPS29-206ENST00000549578 Q6ZSR9 355 aa20.07■□□□□ 0.8
VPS29-206ENST00000549578 COX15Q7KZN9 410 aa20.07■□□□□ 0.8
VPS29-206ENST00000549578 DTX1Q86Y01 620 aa20.07■□□□□ 0.8
VPS29-206ENST00000549578 ESX1Q8N693 406 aa20.07■□□□□ 0.8
VPS29-206ENST00000549578 PIWIL2Q8TC59 973 aaKnown RBP20.07■□□□□ 0.8
VPS29-206ENST00000549578 C19orf60Q96EN9 201 aa20.07■□□□□ 0.8
VPS29-206ENST00000549578 APIPQ96GX9 242 aa20.07■□□□□ 0.8
VPS29-206ENST00000549578 TMEM121BQ9BXQ6 578 aaPredicted RBP20.07■□□□□ 0.8
VPS29-206ENST00000549578 NUF2Q9BZD4 464 aa20.07■□□□□ 0.8
VPS29-206ENST00000549578 A0A088AWK7 358 aa20.07■□□□□ 0.8
VPS29-206ENST00000549578 ATP6AP2A0A1C7CYW4 349 aa20.07■□□□□ 0.8
VPS29-206ENST00000549578 POLR3GO15318 223 aaPredicted RBP20.07■□□□□ 0.8
VPS29-206ENST00000549578 RGS14O43566 566 aa20.07■□□□□ 0.8
VPS29-206ENST00000549578 EEDO75530 441 aaKnown RBP20.07■□□□□ 0.8
VPS29-206ENST00000549578 ATP6AP2O75787 350 aa20.07■□□□□ 0.8
VPS29-206ENST00000549578 GBAP04062 536 aa20.07■□□□□ 0.8
VPS29-206ENST00000549578 ZNF10P21506 573 aaPredicted RBP20.07■□□□□ 0.8
VPS29-206ENST00000549578 HIST1H1TP22492 207 aaPredicted RBP20.07■□□□□ 0.8
VPS29-206ENST00000549578 ATP5A1P25705 553 aaKnown RBP20.07■□□□□ 0.8
VPS29-206ENST00000549578 MTTPP55157 894 aa20.07■□□□□ 0.8
VPS29-206ENST00000549578 SKP1P63208 163 aa20.07■□□□□ 0.8
VPS29-206ENST00000549578 DSG2Q14126 1118 aa20.07■□□□□ 0.8
VPS29-206ENST00000549578 NR6A1Q15406 480 aa20.07■□□□□ 0.8
VPS29-206ENST00000549578 ZNF517Q6ZMY9 492 aaPredicted RBP20.07■□□□□ 0.8
VPS29-206ENST00000549578 COMMD6Q7Z4G1 85 aa20.07■□□□□ 0.8
VPS29-206ENST00000549578 HOMEZQ8IX15 550 aa20.07■□□□□ 0.8
VPS29-206ENST00000549578 CACNA2D3Q8IZS8 1091 aa20.07■□□□□ 0.8
VPS29-206ENST00000549578 METTL4Q8N3J2 472 aa20.07■□□□□ 0.8
VPS29-206ENST00000549578 C1orf52Q8N6N3 182 aaKnown RBP20.07■□□□□ 0.8
VPS29-206ENST00000549578 ACOT4Q8N9L9 421 aa20.07■□□□□ 0.8
VPS29-206ENST00000549578 NKD1Q969G9 470 aa20.07■□□□□ 0.8
VPS29-206ENST00000549578 DPH2Q9BQC3 489 aaPredicted RBP20.07■□□□□ 0.8
VPS29-206ENST00000549578 CCDC134Q9H6E4 229 aa20.07■□□□□ 0.8
VPS29-206ENST00000549578 IFT80Q9P2H3 777 aaPredicted RBP20.07■□□□□ 0.8
VPS29-206ENST00000549578 GIMAP2Q9UG22 337 aa20.07■□□□□ 0.8
VPS29-206ENST00000549578 RSL1D1O76021 490 aaKnown RBP20.06■□□□□ 0.8
VPS29-206ENST00000549578 LIPCP11150 499 aa20.06■□□□□ 0.8
VPS29-206ENST00000549578 NIPAL1Q6NVV3 410 aa20.06■□□□□ 0.8
VPS29-206ENST00000549578 FAM198BQ6UWH4 519 aa20.06■□□□□ 0.8
VPS29-206ENST00000549578 NUDT13Q86X67 352 aa20.06■□□□□ 0.8
VPS29-206ENST00000549578 WDR75Q8IWA0 830 aaKnown RBP20.06■□□□□ 0.8
VPS29-206ENST00000549578 CHTF18Q8WVB6 975 aa20.06■□□□□ 0.8
VPS29-206ENST00000549578 SERINC2Q96SA4 455 aa20.06■□□□□ 0.8
VPS29-206ENST00000549578 YIPF2Q9BWQ6 316 aa20.06■□□□□ 0.8
VPS29-206ENST00000549578 ROGDIQ9GZN7 287 aa20.06■□□□□ 0.8
VPS29-206ENST00000549578 CCDC86Q9H6F5 360 aaKnown RBP20.06■□□□□ 0.8
VPS29-206ENST00000549578 WDR70Q9NW82 654 aa20.06■□□□□ 0.8
VPS29-206ENST00000549578 AHSPQ9NZD4 102 aa20.06■□□□□ 0.8
VPS29-206ENST00000549578 CTSFQ9UBX1 484 aa20.06■□□□□ 0.8
VPS29-206ENST00000549578 HDAC3O15379 428 aa20.05■□□□□ 0.8
VPS29-206ENST00000549578 TLX3O43711 291 aaPredicted RBP20.05■□□□□ 0.8
VPS29-206ENST00000549578 B3GALT2O43825 422 aa20.05■□□□□ 0.8
VPS29-206ENST00000549578 EDF1O60869 148 aaKnown RBP20.05■□□□□ 0.8
VPS29-206ENST00000549578 SCELO95171 688 aa20.05■□□□□ 0.8
VPS29-206ENST00000549578 KLK1P06870 262 aa20.05■□□□□ 0.8
VPS29-206ENST00000549578 STAT5AP42229 794 aa20.05■□□□□ 0.8
VPS29-206ENST00000549578 ARFIP1P53367 373 aa20.05■□□□□ 0.8
VPS29-206ENST00000549578 PCBP4P57723 403 aaKnown RBP20.05■□□□□ 0.8
VPS29-206ENST00000549578 ACSM2AQ08AH3 577 aa20.05■□□□□ 0.8
VPS29-206ENST00000549578 RUNX2Q13950 521 aa20.05■□□□□ 0.8
VPS29-206ENST00000549578 MLIPQ5VWP3 458 aa20.05■□□□□ 0.8
VPS29-206ENST00000549578 ACSM2BQ68CK6 577 aa20.05■□□□□ 0.8
VPS29-206ENST00000549578 CT55Q8WUE5 264 aa20.05■□□□□ 0.8
VPS29-206ENST00000549578 FGF11Q92914 225 aa20.05■□□□□ 0.8
VPS29-206ENST00000549578 NAF1Q96HR8 494 aaKnown RBP20.05■□□□□ 0.8
VPS29-206ENST00000549578 CCT7Q99832 543 aa20.05■□□□□ 0.8
VPS29-206ENST00000549578 DDX31Q9H8H2 851 aaKnown RBP20.05■□□□□ 0.8
VPS29-206ENST00000549578 TRPC4Q9UBN4 977 aa20.05■□□□□ 0.8
VPS29-206ENST00000549578 MAP4K5Q9Y4K4 846 aa20.05■□□□□ 0.8
VPS29-206ENST00000549578 SLCO1B7G3V0H7 640 aa20.04■□□□□ 0.8
VPS29-206ENST00000549578 LSM1O15116 133 aaKnown RBP20.04■□□□□ 0.8
VPS29-206ENST00000549578 CHST10O43529 356 aa20.04■□□□□ 0.8
VPS29-206ENST00000549578 ONECUT2O95948 504 aa20.04■□□□□ 0.8
VPS29-206ENST00000549578 PIM1P11309 404 aaPredicted RBP20.04■□□□□ 0.8
VPS29-206ENST00000549578 TSFMP43897 325 aaKnown RBP20.04■□□□□ 0.8
VPS29-206ENST00000549578 FOXL2P58012 376 aa20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms