RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 CCDC71Q8IV32 467 aaPredicted RBP17.72■□□□□ 0.43
PRPF40B-208ENST00000548436 ZC3H7AQ8IWR0 971 aaKnown RBP17.72■□□□□ 0.43
PRPF40B-208ENST00000548436 KRT78Q8N1N4 520 aa17.72■□□□□ 0.43
PRPF40B-208ENST00000548436 ANKRD53Q8N9V6 530 aa17.72■□□□□ 0.43
PRPF40B-208ENST00000548436 SPPL2AQ8TCT8 520 aa17.72■□□□□ 0.43
PRPF40B-208ENST00000548436 FKBP10Q96AY3 582 aa17.72■□□□□ 0.43
PRPF40B-208ENST00000548436 TAMM41Q96BW9 452 aa17.72■□□□□ 0.43
PRPF40B-208ENST00000548436 MTERF3Q96E29 417 aa17.72■□□□□ 0.43
PRPF40B-208ENST00000548436 THAP11Q96EK4 314 aa17.72■□□□□ 0.43
PRPF40B-208ENST00000548436 MENTQ9BUN1 341 aa17.72■□□□□ 0.43
PRPF40B-208ENST00000548436 RUBCNLQ9H714 662 aa17.72■□□□□ 0.43
PRPF40B-208ENST00000548436 MAP4K5Q9Y4K4 846 aa17.72■□□□□ 0.43
PRPF40B-208ENST00000548436 HSPE1-MOB4S4R3N1 261 aa17.72■□□□□ 0.43
PRPF40B-208ENST00000548436 A0A1W2PRB8 838 aa17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 PLPP1O14494 284 aa17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 KAT7O95251 611 aa17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 ITIH1P19827 911 aa17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 PSMB5P28074 263 aa17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 GP2P55259 537 aaKnown RBP17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 EEF1A2Q05639 463 aaKnown RBP17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 RUNX3Q13761 415 aa17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 CYP2A13Q16696 494 aa17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 AGBL4Q5VU57 503 aa17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 C17orf64Q86WR6 236 aa17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 RAB2BQ8WUD1 216 aa17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 UBE2FQ969M7 185 aa17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 ZNF717Q9BY31 904 aaPredicted RBP17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 TMEM38AQ9H6F2 299 aa17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 TRPV4Q9HBA0 871 aa17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 MBNL1Q9NR56 388 aaKnown RBP17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 ERVK-18Q9QC07 812 aa17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 PCDHGB3Q9Y5G1 929 aa17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 DGKBQ9Y6T7 804 aa17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 CKAP5Q14008 2032 aa17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 PRAMEF25A6NGN4 478 aa17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 E9PQ18 207 aa17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 RTCAO00442 366 aaKnown RBP17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 PCDH8O95206 1070 aa17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 JUNDP17535 347 aa17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 CHI3L1P36222 383 aaPredicted RBP17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 OR1E2P47887 323 aa17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 CYP4F2P78329 520 aa17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 EMX1Q04741 257 aaPredicted RBP17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 NPRL3Q12980 569 aa17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 BNIP3Q12983 259 aa17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 FADDQ13158 208 aa17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 COL13A1Q5TAT6 717 aaPredicted RBP17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 KIAA1614Q5VZ46 1190 aa17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 ADGRF3Q8IZF5 1079 aa17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 OXR1Q8N573 874 aa17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 TBC1D15Q8TC07 691 aa17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 FUNDC2Q9BWH2 189 aa17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 PLA2G2FQ9BZM2 168 aa17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 GPN2Q9H9Y4 310 aaPredicted RBP17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 OBP2AQ9NY56 170 aa17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 GDE1Q9NZC3 331 aa17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 ZNF451Q9Y4E5 1061 aa17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 TESMINQ9Y4I5 508 aa17.71■□□□□ 0.43
PRPF40B-208ENST00000548436 HTR1BP28222 390 aa17.7■□□□□ 0.42
PRPF40B-208ENST00000548436 CD6P30203 668 aa17.7■□□□□ 0.42
PRPF40B-208ENST00000548436 PRIM2P49643 509 aa17.7■□□□□ 0.42
PRPF40B-208ENST00000548436 SLC35A2P78381 396 aa17.7■□□□□ 0.42
PRPF40B-208ENST00000548436 RBBP4Q09028 425 aa17.7■□□□□ 0.42
PRPF40B-208ENST00000548436 SMN1Q16637 294 aaKnown RBP17.7■□□□□ 0.42
PRPF40B-208ENST00000548436 FAM46CQ5VWP2 391 aa17.7■□□□□ 0.42
PRPF40B-208ENST00000548436 DUS1LQ6P1R4 473 aaKnown RBP17.7■□□□□ 0.42
PRPF40B-208ENST00000548436 IKBIPQ70UQ0 350 aa17.7■□□□□ 0.42
PRPF40B-208ENST00000548436 TSPYL5Q86VY4 417 aaPredicted RBP17.7■□□□□ 0.42
PRPF40B-208ENST00000548436 FAR1Q8WVX9 515 aa17.7■□□□□ 0.42
PRPF40B-208ENST00000548436 F2RL3Q96RI0 385 aa17.7■□□□□ 0.42
PRPF40B-208ENST00000548436 APOL4Q9BPW4 351 aa17.7■□□□□ 0.42
PRPF40B-208ENST00000548436 RHNO1Q9BSD3 238 aa17.7■□□□□ 0.42
PRPF40B-208ENST00000548436 RHBGQ9H310 441 aa17.7■□□□□ 0.42
PRPF40B-208ENST00000548436 DUSP21Q9H596 190 aa17.7■□□□□ 0.42
PRPF40B-208ENST00000548436 MIEF1Q9NQG6 463 aa17.7■□□□□ 0.42
PRPF40B-208ENST00000548436 SERGEFQ9UGK8 458 aa17.7■□□□□ 0.42
PRPF40B-208ENST00000548436 WARS2Q9UGM6 360 aaKnown RBP17.7■□□□□ 0.42
PRPF40B-208ENST00000548436 OR1A2Q9Y585 309 aa17.7■□□□□ 0.42
PRPF40B-208ENST00000548436 PCDHGB1Q9Y5G3 927 aa17.7■□□□□ 0.42
PRPF40B-208ENST00000548436 LYVE1Q9Y5Y7 322 aa17.7■□□□□ 0.42
PRPF40B-208ENST00000548436 MYO10Q9HD67 2058 aa17.7■□□□□ 0.42
PRPF40B-208ENST00000548436 RANBP2P49792 3224 aaKnown RBP17.7■□□□□ 0.42
PRPF40B-208ENST00000548436 FEZF1A0PJY2 475 aa17.7■□□□□ 0.42
PRPF40B-208ENST00000548436 ANKDD1BA6NHY2 528 aa17.7■□□□□ 0.42
PRPF40B-208ENST00000548436 AXIN1O15169 862 aa17.7■□□□□ 0.42
PRPF40B-208ENST00000548436 SOAT1P35610 550 aa17.7■□□□□ 0.42
PRPF40B-208ENST00000548436 RPP38P78345 283 aaKnown RBP17.7■□□□□ 0.42
PRPF40B-208ENST00000548436 CDK6Q00534 326 aa17.7■□□□□ 0.42
PRPF40B-208ENST00000548436 ARHGAP19Q14CB8 494 aa17.7■□□□□ 0.42
PRPF40B-208ENST00000548436 MAD2L1BPQ15013 274 aaPredicted RBP17.7■□□□□ 0.42
PRPF40B-208ENST00000548436 CYP27C1Q4G0S4 372 aa17.7■□□□□ 0.42
PRPF40B-208ENST00000548436 DEPDC1Q5TB30 811 aa17.7■□□□□ 0.42
PRPF40B-208ENST00000548436 KHDRBS2Q5VWX1 349 aaKnown RBP17.7■□□□□ 0.42
PRPF40B-208ENST00000548436 TRIM40Q6P9F5 258 aa17.7■□□□□ 0.42
PRPF40B-208ENST00000548436 SLC16A12Q6ZSM3 486 aa17.7■□□□□ 0.42
PRPF40B-208ENST00000548436 CCDC80Q76M96 950 aa17.7■□□□□ 0.42
PRPF40B-208ENST00000548436 PITX2Q99697 317 aa17.7■□□□□ 0.42
PRPF40B-208ENST00000548436 MS4A8Q9BY19 250 aa17.7■□□□□ 0.42
PRPF40B-208ENST00000548436 MTIF3Q9H2K0 278 aaKnown RBP17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms