RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 RETP07949 1114 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 DDCP20711 480 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 CACNG1Q06432 222 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 CBLBQ13191 982 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 PARP15Q460N3 678 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 KHDRBS2Q5VWX1 349 aaKnown RBP13.72□□□□□ -0.21
LIMS1-215ENST00000544547 KCTD11Q693B1 232 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 RAET1GQ6H3X3 334 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 PSAPL1Q6NUJ1 521 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 PGBD2Q6P3X8 592 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 UBQLNLQ8IYU4 475 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 FAM46DQ8NEK8 389 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 MRPL48Q96GC5 212 aaKnown RBP13.72□□□□□ -0.21
LIMS1-215ENST00000544547 UBXN10Q96LJ8 280 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 PDCD10Q9BUL8 212 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 PAK6Q9NQU5 681 aaPredicted RBP13.72□□□□□ -0.21
LIMS1-215ENST00000544547 PADI3Q9ULW8 664 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.72□□□□□ -0.21
LIMS1-215ENST00000544547 FXYD6-FXYD2A0A087WZ82 144 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 ARPC4-TTLL3A0A0A6YYG9 625 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 CDK1P06493 297 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 ALPIP09923 528 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 IFNGR2P38484 337 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 AVPR1BP47901 424 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 SMIM11AP58511 58 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 TAF1AQ15573 450 aaPredicted RBP13.72□□□□□ -0.21
LIMS1-215ENST00000544547 ZBTB6Q15916 424 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 FAM205BPQ63HN1 556 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 GALNT7Q86SF2 657 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 DNAJB8Q8NHS0 232 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 SLC9A6Q92581 669 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 IMP4Q96G21 291 aaKnown RBP13.72□□□□□ -0.21
LIMS1-215ENST00000544547 OR5M11Q96RB7 305 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 FXYD6Q9H0Q3 95 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 MAGIXQ9H6Y5 334 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 GLTPQ9NZD2 209 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 AHDC1Q5TGY3 1603 aaPredicted RBP13.72□□□□□ -0.21
LIMS1-215ENST00000544547 WNT9AO14904 365 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 ANKRD28O15084 1053 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 EPHA2P29317 976 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 NUP62P37198 522 aaPredicted RBP13.72□□□□□ -0.21
LIMS1-215ENST00000544547 PSMD8P48556 350 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 GMFBP60983 142 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 CXCR4P61073 352 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 ESCO2Q56NI9 601 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 SMARCD3Q6STE5 483 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 ARSKQ6UWY0 536 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 TNFAIP8L1Q8WVP5 186 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 DNAJA4Q8WW22 397 aaPredicted RBP13.72□□□□□ -0.21
LIMS1-215ENST00000544547 GATAD2BQ8WXI9 593 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 SCRN2Q96FV2 425 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 C11orf54Q9H0W9 315 aaPredicted RBP13.72□□□□□ -0.21
LIMS1-215ENST00000544547 ZNF385DQ9H6B1 395 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 GULP1Q9UBP9 304 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 ERAL1O75616 437 aaKnown RBP13.72□□□□□ -0.21
LIMS1-215ENST00000544547 SNAI1O95863 264 aaPredicted RBP13.72□□□□□ -0.21
LIMS1-215ENST00000544547 LCN1P31025 176 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 TGFBR2P37173 567 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 DBPQ10586 325 aaPredicted RBP13.72□□□□□ -0.21
LIMS1-215ENST00000544547 SLC16A12Q6ZSM3 486 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 MFSD4AQ8N468 514 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 ZNF548Q8NEK5 533 aaPredicted RBP13.72□□□□□ -0.21
LIMS1-215ENST00000544547 HMGCLL1Q8TB92 370 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 USP7Q93009 1102 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 ACBD6Q9BR61 282 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 BRD9Q9H8M2 597 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 TREX1Q9NSU2 369 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 YARS2Q9Y2Z4 477 aaKnown RBP13.72□□□□□ -0.21
LIMS1-215ENST00000544547 NHSQ6T4R5 1651 aa13.72□□□□□ -0.21
LIMS1-215ENST00000544547 NHSL1Q5SYE7 1610 aa13.71□□□□□ -0.21
LIMS1-215ENST00000544547 PCDHGA12O60330 932 aa13.71□□□□□ -0.21
LIMS1-215ENST00000544547 ARHGEF15O94989 841 aa13.71□□□□□ -0.21
LIMS1-215ENST00000544547 ADORA3P0DMS8 318 aa13.71□□□□□ -0.21
LIMS1-215ENST00000544547 IL32P24001 234 aa13.71□□□□□ -0.21
LIMS1-215ENST00000544547 ACSL1P33121 698 aa13.71□□□□□ -0.21
LIMS1-215ENST00000544547 UGT3A2Q3SY77 523 aa13.71□□□□□ -0.21
LIMS1-215ENST00000544547 PKDCCQ504Y2 493 aa13.71□□□□□ -0.21
LIMS1-215ENST00000544547 C1orf52Q8N6N3 182 aaKnown RBP13.71□□□□□ -0.21
LIMS1-215ENST00000544547 SAMD12Q8N8I0 201 aa13.71□□□□□ -0.21
LIMS1-215ENST00000544547 SETD6Q8TBK2 473 aa13.71□□□□□ -0.21
LIMS1-215ENST00000544547 PPP1R16AQ96I34 528 aa13.71□□□□□ -0.21
LIMS1-215ENST00000544547 SLC2A13Q96QE2 648 aa13.71□□□□□ -0.21
LIMS1-215ENST00000544547 ATOH8Q96SQ7 321 aa13.71□□□□□ -0.21
LIMS1-215ENST00000544547 SLC35A5Q9BS91 424 aa13.71□□□□□ -0.21
LIMS1-215ENST00000544547 ADH1AP07327 375 aa13.71□□□□□ -0.21
LIMS1-215ENST00000544547 CTSEP14091 401 aa13.71□□□□□ -0.21
LIMS1-215ENST00000544547 PTNP21246 168 aa13.71□□□□□ -0.21
LIMS1-215ENST00000544547 DRD5P21918 477 aa13.71□□□□□ -0.21
LIMS1-215ENST00000544547 GABRR2P28476 465 aa13.71□□□□□ -0.21
LIMS1-215ENST00000544547 MAGEA2P43356 314 aa13.71□□□□□ -0.21
LIMS1-215ENST00000544547 AFF1P51825 1210 aaKnown RBP13.71□□□□□ -0.21
LIMS1-215ENST00000544547 RPS24P62847 133 aaKnown RBP13.71□□□□□ -0.21
LIMS1-215ENST00000544547 VLDLRP98155 873 aa13.71□□□□□ -0.21
LIMS1-215ENST00000544547 ATXN7L2Q5T6C5 722 aaPredicted RBP13.71□□□□□ -0.21
LIMS1-215ENST00000544547 SHFQ7M4L6 423 aa13.71□□□□□ -0.21
LIMS1-215ENST00000544547 DNAJC5GQ8N7S2 189 aa13.71□□□□□ -0.21
LIMS1-215ENST00000544547 MAPKAP1Q9BPZ7 522 aa13.71□□□□□ -0.21
LIMS1-215ENST00000544547 SLX4Q8IY92 1834 aa13.71□□□□□ -0.21
LIMS1-215ENST00000544547 GLYATL1P3A0A0U1RQE8 302 aa13.71□□□□□ -0.22
LIMS1-215ENST00000544547 OR6C75A6NL08 312 aa13.71□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms