RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 LDOC1O95751 146 aaPredicted RBP3.58□□□□□ -1.84
CD44-235ENST00000532339 BCL10O95999 233 aa3.58□□□□□ -1.84
CD44-235ENST00000532339 APOHP02749 345 aaPredicted RBP3.58□□□□□ -1.84
CD44-235ENST00000532339 RBMS1P29558 406 aaKnown RBP3.58□□□□□ -1.84
CD44-235ENST00000532339 CCND2P30279 289 aa3.58□□□□□ -1.84
CD44-235ENST00000532339 MC5RP33032 325 aa3.58□□□□□ -1.84
CD44-235ENST00000532339 PTGER4P35408 488 aa3.58□□□□□ -1.84
CD44-235ENST00000532339 GNL1P36915 607 aaPredicted RBP3.58□□□□□ -1.84
CD44-235ENST00000532339 APOBEC1P41238 236 aaKnown RBP3.58□□□□□ -1.84
CD44-235ENST00000532339 DUSP3P51452 185 aaPredicted RBP3.58□□□□□ -1.84
CD44-235ENST00000532339 ATP12AP54707 1039 aa3.58□□□□□ -1.84
CD44-235ENST00000532339 MLLT10P55197 1068 aa3.58□□□□□ -1.84
CD44-235ENST00000532339 KLRB1Q12918 225 aa3.58□□□□□ -1.84
CD44-235ENST00000532339 DNAJC3Q13217 504 aa3.58□□□□□ -1.84
CD44-235ENST00000532339 CAMK2DQ13557 499 aa3.58□□□□□ -1.84
CD44-235ENST00000532339 RUNX3Q13761 415 aa3.58□□□□□ -1.84
CD44-235ENST00000532339 SBK1Q52WX2 424 aa3.58□□□□□ -1.84
CD44-235ENST00000532339 DHRS7BQ6IAN0 325 aaPredicted RBP3.58□□□□□ -1.84
CD44-235ENST00000532339 TEX38Q6PEX7 206 aa3.58□□□□□ -1.84
CD44-235ENST00000532339 PRSS55Q6UWB4 352 aaPredicted RBP3.58□□□□□ -1.84
CD44-235ENST00000532339 STOX1Q6ZVD7 989 aa3.58□□□□□ -1.84
CD44-235ENST00000532339 CCDC186Q7Z3E2 898 aa3.58□□□□□ -1.84
CD44-235ENST00000532339 LDB1Q86U70 411 aaPredicted RBP3.58□□□□□ -1.84
CD44-235ENST00000532339 TMEM219Q86XT9 240 aa3.58□□□□□ -1.84
CD44-235ENST00000532339 CEP97Q8IW35 865 aa3.58□□□□□ -1.84
CD44-235ENST00000532339 RASGEF1CQ8N431 466 aa3.58□□□□□ -1.84
CD44-235ENST00000532339 OR2AK2Q8NG84 335 aa3.58□□□□□ -1.84
CD44-235ENST00000532339 BBS10Q8TAM1 723 aa3.58□□□□□ -1.84
CD44-235ENST00000532339 GSDMBQ8TAX9 411 aa3.58□□□□□ -1.84
CD44-235ENST00000532339 PDCD6IPQ8WUM4 868 aaKnown RBP3.58□□□□□ -1.84
CD44-235ENST00000532339 SLC20A1Q8WUM9 679 aa3.58□□□□□ -1.84
CD44-235ENST00000532339 RHBDF1Q96CC6 855 aa3.58□□□□□ -1.84
CD44-235ENST00000532339 FER1L6-AS2Q96M78 137 aa3.58□□□□□ -1.84
CD44-235ENST00000532339 CFAP57Q96MR6 1250 aa3.58□□□□□ -1.84
CD44-235ENST00000532339 LRRC3BQ96PB8 259 aa3.58□□□□□ -1.84
CD44-235ENST00000532339 DDOQ99489 341 aa3.58□□□□□ -1.84
CD44-235ENST00000532339 FUCA2Q9BTY2 467 aa3.58□□□□□ -1.84
CD44-235ENST00000532339 CSTL1Q9H114 145 aa3.58□□□□□ -1.84
CD44-235ENST00000532339 MMP27Q9H306 513 aa3.58□□□□□ -1.84
CD44-235ENST00000532339 KCNK15Q9H427 330 aa3.58□□□□□ -1.84
CD44-235ENST00000532339 OPA3Q9H6K4 179 aa3.58□□□□□ -1.84
CD44-235ENST00000532339 OLAHQ9NV23 265 aa3.58□□□□□ -1.84
CD44-235ENST00000532339 TMEM30AQ9NV96 361 aa3.58□□□□□ -1.84
CD44-235ENST00000532339 LARSQ9P2J5 1176 aaKnown RBP3.58□□□□□ -1.84
CD44-235ENST00000532339 AMACRQ9UHK6 382 aa3.58□□□□□ -1.84
CD44-235ENST00000532339 OSGIN1Q9UJX0 560 aa3.58□□□□□ -1.84
CD44-235ENST00000532339 STX8Q9UNK0 236 aa3.58□□□□□ -1.84
CD44-235ENST00000532339 TMEM184BQ9Y519 407 aaPredicted RBP3.58□□□□□ -1.84
CD44-235ENST00000532339 ZNF532Q9HCE3 1301 aa3.58□□□□□ -1.84
CD44-235ENST00000532339 TGP01266 2768 aa3.58□□□□□ -1.84
CD44-235ENST00000532339 IGHV1OR15-9A0A0B4J2B8 117 aa3.57□□□□□ -1.84
CD44-235ENST00000532339 ADAM12O43184 909 aa3.57□□□□□ -1.84
CD44-235ENST00000532339 TBCAO75347 108 aaKnown RBP3.57□□□□□ -1.84
CD44-235ENST00000532339 ZNF217O75362 1048 aa3.57□□□□□ -1.84
CD44-235ENST00000532339 TADA2AO75478 443 aa3.57□□□□□ -1.84
CD44-235ENST00000532339 SF3B1O75533 1304 aaKnown RBP eCLIP3.57□□□□□ -1.84
CD44-235ENST00000532339 SLCO2B1O94956 709 aa3.57□□□□□ -1.84
CD44-235ENST00000532339 ZWINTO95229 277 aa3.57□□□□□ -1.84
CD44-235ENST00000532339 AMBPP02760 352 aa3.57□□□□□ -1.84
CD44-235ENST00000532339 FYNP06241 537 aa3.57□□□□□ -1.84
CD44-235ENST00000532339 PRSS1P07477 247 aa3.57□□□□□ -1.84
CD44-235ENST00000532339 CCDC175P0C221 793 aa3.57□□□□□ -1.84
CD44-235ENST00000532339 UBTFL1P0CB47 393 aaPredicted RBP3.57□□□□□ -1.84
CD44-235ENST00000532339 IFNAR1P17181 557 aa3.57□□□□□ -1.84
CD44-235ENST00000532339 S1PR1P21453 382 aa3.57□□□□□ -1.84
CD44-235ENST00000532339 PTPRDP23468 1912 aa3.57□□□□□ -1.84
CD44-235ENST00000532339 ARSEP51690 589 aa3.57□□□□□ -1.84
CD44-235ENST00000532339 ERVK11-1P61568 191 aa3.57□□□□□ -1.84
CD44-235ENST00000532339 CSNK2A1P68400 391 aaPredicted RBP3.57□□□□□ -1.84
CD44-235ENST00000532339 SIRPAP78324 504 aa3.57□□□□□ -1.84
CD44-235ENST00000532339 PPARDQ03181 441 aa3.57□□□□□ -1.84
CD44-235ENST00000532339 ESPL1Q14674 2120 aa3.57□□□□□ -1.84
CD44-235ENST00000532339 TEAD2Q15562 447 aa3.57□□□□□ -1.84
CD44-235ENST00000532339 MYLKQ15746 1914 aa3.57□□□□□ -1.84
CD44-235ENST00000532339 PSMD5Q16401 504 aa3.57□□□□□ -1.84
CD44-235ENST00000532339 FAM98BQ52LJ0 330 aaKnown RBP3.57□□□□□ -1.84
CD44-235ENST00000532339 CST9LP1Q5W188 147 aa3.57□□□□□ -1.84
CD44-235ENST00000532339 TMEM211Q6ICI0 200 aa3.57□□□□□ -1.84
CD44-235ENST00000532339 KCTD18Q6PI47 426 aaPredicted RBP3.57□□□□□ -1.84
CD44-235ENST00000532339 PAPD4Q6PIY7 484 aaKnown RBP3.57□□□□□ -1.84
CD44-235ENST00000532339 CAMKMTQ7Z624 323 aa3.57□□□□□ -1.84
CD44-235ENST00000532339 CCDC190Q86UF4 302 aa3.57□□□□□ -1.84
CD44-235ENST00000532339 RNF113BQ8IZP6 322 aaKnown RBP3.57□□□□□ -1.84
CD44-235ENST00000532339 PCDH20Q8N6Y1 951 aaKnown RBP3.57□□□□□ -1.84
CD44-235ENST00000532339 RBM15BQ8NDT2 890 aaKnown RBP3.57□□□□□ -1.84
CD44-235ENST00000532339 CSNK2A3Q8NEV1 391 aa3.57□□□□□ -1.84
CD44-235ENST00000532339 OR10S1Q8NGN2 331 aa3.57□□□□□ -1.84
CD44-235ENST00000532339 CFAP61Q8NHU2 1237 aa3.57□□□□□ -1.84
CD44-235ENST00000532339 ABTB1Q969K4 478 aaPredicted RBP3.57□□□□□ -1.84
CD44-235ENST00000532339 TAAR8Q969N4 342 aa3.57□□□□□ -1.84
CD44-235ENST00000532339 ORAI1Q96D31 301 aa3.57□□□□□ -1.84
CD44-235ENST00000532339 SPATA17Q96L03 361 aa3.57□□□□□ -1.84
CD44-235ENST00000532339 ZNF830Q96NB3 372 aaPredicted RBP3.57□□□□□ -1.84
CD44-235ENST00000532339 GFI1Q99684 422 aa3.57□□□□□ -1.84
CD44-235ENST00000532339 NAA11Q9BSU3 229 aaPredicted RBP3.57□□□□□ -1.84
CD44-235ENST00000532339 LRRC1Q9BTT6 524 aa3.57□□□□□ -1.84
CD44-235ENST00000532339 AZI2Q9H6S1 392 aa3.57□□□□□ -1.84
CD44-235ENST00000532339 FKRPQ9H9S5 495 aa3.57□□□□□ -1.84
CD44-235ENST00000532339 HPS4Q9NQG7 708 aa3.57□□□□□ -1.84
CD44-235ENST00000532339 TRMT1Q9NXH9 659 aaKnown RBP3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms