RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 NENFQ9UMX5 172 aa7.61□□□□□ -1.19
CD44-232ENST00000531118 ERVK-11Q9UQG0 969 aa7.61□□□□□ -1.19
CD44-232ENST00000531118 DRG1Q9Y295 367 aaKnown RBP7.61□□□□□ -1.19
CD44-232ENST00000531118 AAR2Q9Y312 384 aaKnown RBP7.61□□□□□ -1.19
CD44-232ENST00000531118 PCDHA3Q9Y5H8 950 aa7.61□□□□□ -1.19
CD44-232ENST00000531118 NPFFR2Q9Y5X5 522 aa7.61□□□□□ -1.19
CD44-232ENST00000531118 MEGF8Q7Z7M0 2845 aa7.6□□□□□ -1.19
CD44-232ENST00000531118 ATP6AP2A0A1C7CYW4 349 aa7.6□□□□□ -1.19
CD44-232ENST00000531118 CCDC162PA2VCL2 907 aa7.6□□□□□ -1.19
CD44-232ENST00000531118 SH3D21A4FU49 640 aa7.6□□□□□ -1.19
CD44-232ENST00000531118 LRRC10BA6NIK2 292 aa7.6□□□□□ -1.19
CD44-232ENST00000531118 HACD1B0YJ81 288 aa7.6□□□□□ -1.19
CD44-232ENST00000531118 KIF5CO60282 957 aa7.6□□□□□ -1.19
CD44-232ENST00000531118 HCN1O60741 890 aa7.6□□□□□ -1.19
CD44-232ENST00000531118 ATP6AP2O75787 350 aa7.6□□□□□ -1.19
CD44-232ENST00000531118 FPR1P21462 350 aa7.6□□□□□ -1.19
CD44-232ENST00000531118 PSMA3P25788 255 aa7.6□□□□□ -1.19
CD44-232ENST00000531118 RBL1P28749 1068 aa7.6□□□□□ -1.19
CD44-232ENST00000531118 RELAQ04206 551 aa7.6□□□□□ -1.19
CD44-232ENST00000531118 RUNX1T1Q06455 604 aa7.6□□□□□ -1.19
CD44-232ENST00000531118 ODF2Q5BJF6 829 aa7.6□□□□□ -1.19
CD44-232ENST00000531118 ALKBH5Q6P6C2 394 aaKnown RBP7.6□□□□□ -1.19
CD44-232ENST00000531118 AFTPHQ6ULP2 937 aa7.6□□□□□ -1.19
CD44-232ENST00000531118 KIAA0408Q6ZU52 694 aa7.6□□□□□ -1.19
CD44-232ENST00000531118 C8orf86Q6ZUL3 223 aa7.6□□□□□ -1.19
CD44-232ENST00000531118 HIPK1Q86Z02 1210 aa7.6□□□□□ -1.19
CD44-232ENST00000531118 GALNT12Q8IXK2 581 aa7.6□□□□□ -1.19
CD44-232ENST00000531118 GPALPP1Q8IXQ4 340 aa7.6□□□□□ -1.19
CD44-232ENST00000531118 OR5T3Q8NGG3 340 aa7.6□□□□□ -1.19
CD44-232ENST00000531118 P3H4Q92791 437 aa7.6□□□□□ -1.19
CD44-232ENST00000531118 CAPZA3Q96KX2 299 aa7.6□□□□□ -1.19
CD44-232ENST00000531118 FAM173AQ9BQD7 235 aa7.6□□□□□ -1.19
CD44-232ENST00000531118 AARSD1Q9BTE6 412 aaKnown RBP7.6□□□□□ -1.19
CD44-232ENST00000531118 C19orf24Q9BVV8 132 aa7.6□□□□□ -1.19
CD44-232ENST00000531118 CARD6Q9BX69 1037 aa7.6□□□□□ -1.19
CD44-232ENST00000531118 PACSIN1Q9BY11 444 aa7.6□□□□□ -1.19
CD44-232ENST00000531118 LDAHQ9H6V9 325 aa7.6□□□□□ -1.19
CD44-232ENST00000531118 EXO5Q9H790 373 aa7.6□□□□□ -1.19
CD44-232ENST00000531118 C10orf88Q9H8K7 445 aa7.6□□□□□ -1.19
CD44-232ENST00000531118 IL1RL2Q9HB29 575 aa7.6□□□□□ -1.19
CD44-232ENST00000531118 ZNF629Q9UEG4 869 aaPredicted RBP7.6□□□□□ -1.19
CD44-232ENST00000531118 ZNF223Q9UK11 482 aaPredicted RBP7.6□□□□□ -1.19
CD44-232ENST00000531118 FBXW2Q9UKT8 454 aa7.6□□□□□ -1.19
CD44-232ENST00000531118 EIF3LQ9Y262 564 aaKnown RBP7.6□□□□□ -1.19
CD44-232ENST00000531118 MED12LQ86YW9 2145 aa7.6□□□□□ -1.19
CD44-232ENST00000531118 MED12Q93074 2177 aa7.59□□□□□ -1.19
CD44-232ENST00000531118 IGKV3D-11A0A0A0MRZ8 115 aa7.59□□□□□ -1.19
CD44-232ENST00000531118 TRGV5A0A0B4J1U4 118 aa7.59□□□□□ -1.19
CD44-232ENST00000531118 TCRBV16S1A1N1A0A5B0 115 aa7.59□□□□□ -1.19
CD44-232ENST00000531118 MYO1CO00159 1063 aa7.59□□□□□ -1.19
CD44-232ENST00000531118 SOX30O94993 753 aa7.59□□□□□ -1.19
CD44-232ENST00000531118 OR6B1O95007 311 aa7.59□□□□□ -1.19
CD44-232ENST00000531118 GOT2P00505 430 aaKnown RBP7.59□□□□□ -1.19
CD44-232ENST00000531118 TPH1P17752 444 aa7.59□□□□□ -1.19
CD44-232ENST00000531118 IL10P22301 178 aa7.59□□□□□ -1.19
CD44-232ENST00000531118 JAK1P23458 1154 aa7.59□□□□□ -1.19
CD44-232ENST00000531118 DNASE1L1P49184 302 aa7.59□□□□□ -1.19
CD44-232ENST00000531118 CLCN2P51788 898 aa7.59□□□□□ -1.19
CD44-232ENST00000531118 PRDX1Q06830 199 aaKnown RBP7.59□□□□□ -1.19
CD44-232ENST00000531118 CAPRIN1Q14444 709 aaKnown RBP7.59□□□□□ -1.19
CD44-232ENST00000531118 PRPSAP1Q14558 356 aa7.59□□□□□ -1.19
CD44-232ENST00000531118 SEMA3AQ14563 771 aa7.59□□□□□ -1.19
CD44-232ENST00000531118 HYAL4Q2M3T9 481 aa7.59□□□□□ -1.19
CD44-232ENST00000531118 CHRFAM7AQ494W8 412 aa7.59□□□□□ -1.19
CD44-232ENST00000531118 LRRC38Q5VT99 294 aa7.59□□□□□ -1.19
CD44-232ENST00000531118 QSOX2Q6ZRP7 698 aa7.59□□□□□ -1.19
CD44-232ENST00000531118 ABHD13Q7L211 337 aa7.59□□□□□ -1.19
CD44-232ENST00000531118 WFDC8Q8IUA0 241 aa7.59□□□□□ -1.19
CD44-232ENST00000531118 LACC1Q8IV20 430 aa7.59□□□□□ -1.19
CD44-232ENST00000531118 CCDC50Q8IVM0 306 aa7.59□□□□□ -1.19
CD44-232ENST00000531118 KLHDC8BQ8IXV7 354 aa7.59□□□□□ -1.19
CD44-232ENST00000531118 MAPK1IP1LQ8NDC0 245 aa7.59□□□□□ -1.19
CD44-232ENST00000531118 OR13J1Q8NGT2 312 aa7.59□□□□□ -1.19
CD44-232ENST00000531118 GSDMBQ8TAX9 411 aa7.59□□□□□ -1.19
CD44-232ENST00000531118 MAGEC3Q8TD91 643 aa7.59□□□□□ -1.19
CD44-232ENST00000531118 ASB15Q8WXK1 588 aa7.59□□□□□ -1.19
CD44-232ENST00000531118 CTNNBL1Q8WYA6 563 aaPredicted RBP7.59□□□□□ -1.19
CD44-232ENST00000531118 TBC1D20Q96BZ9 403 aa7.59□□□□□ -1.19
CD44-232ENST00000531118 HSPBAP1Q96EW2 488 aa7.59□□□□□ -1.19
CD44-232ENST00000531118 CCDC138Q96M89 665 aa7.59□□□□□ -1.19
CD44-232ENST00000531118 FOPNLQ96NB1 174 aa7.59□□□□□ -1.19
CD44-232ENST00000531118 MACROD1Q9BQ69 325 aa7.59□□□□□ -1.19
CD44-232ENST00000531118 WDR83Q9BRX9 315 aaKnown RBP7.59□□□□□ -1.19
CD44-232ENST00000531118 AMBRA1Q9C0C7 1298 aa7.59□□□□□ -1.19
CD44-232ENST00000531118 SLC6A15Q9H2J7 730 aa7.59□□□□□ -1.19
CD44-232ENST00000531118 RASSF4Q9H2L5 321 aa7.59□□□□□ -1.19
CD44-232ENST00000531118 ZNF703Q9H7S9 590 aaPredicted RBP7.59□□□□□ -1.19
CD44-232ENST00000531118 DDX56Q9NY93 547 aaKnown RBP7.59□□□□□ -1.19
CD44-232ENST00000531118 JKAMPQ9P055 326 aa7.59□□□□□ -1.19
CD44-232ENST00000531118 NAALAD2Q9Y3Q0 740 aa7.59□□□□□ -1.19
CD44-232ENST00000531118 TESMINQ9Y4I5 508 aa7.59□□□□□ -1.19
CD44-232ENST00000531118 PCDHGB3Q9Y5G1 929 aa7.59□□□□□ -1.19
CD44-232ENST00000531118 NINQ8N4C6 2090 aa7.58□□□□□ -1.2
CD44-232ENST00000531118 hCG_1818297A0A087WSY0 165 aa7.58□□□□□ -1.2
CD44-232ENST00000531118 A0A087X1B8 175 aa7.58□□□□□ -1.2
CD44-232ENST00000531118 MROH6A6NGR9 719 aa7.58□□□□□ -1.2
CD44-232ENST00000531118 A8MUA0 341 aa7.58□□□□□ -1.2
CD44-232ENST00000531118 H7C0C1 242 aa7.58□□□□□ -1.2
CD44-232ENST00000531118 EIF1AYO14602 144 aaKnown RBP7.58□□□□□ -1.2
CD44-232ENST00000531118 KCNAB3O43448 404 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms