RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 LSG1Q9H089 658 aaKnown RBP3.84□□□□□ -1.79
CD44-223ENST00000526553 SNX25Q9H3E2 840 aa3.84□□□□□ -1.79
CD44-223ENST00000526553 SRD5A3Q9H8P0 318 aa3.84□□□□□ -1.79
CD44-223ENST00000526553 AKIRIN1Q9H9L7 192 aaPredicted RBP3.84□□□□□ -1.79
CD44-223ENST00000526553 STX8Q9UNK0 236 aa3.84□□□□□ -1.79
CD44-223ENST00000526553 ITM2BQ9Y287 266 aa3.84□□□□□ -1.79
CD44-223ENST00000526553 ACEP12821 1306 aa3.84□□□□□ -1.79
CD44-223ENST00000526553 F8VVB4 439 aa3.83□□□□□ -1.8
CD44-223ENST00000526553 F8VWA3 439 aa3.83□□□□□ -1.8
CD44-223ENST00000526553 NPIPB9F8W1W9 429 aa3.83□□□□□ -1.8
CD44-223ENST00000526553 ST8SIA3O43173 380 aa3.83□□□□□ -1.8
CD44-223ENST00000526553 CYTIPO60759 359 aa3.83□□□□□ -1.8
CD44-223ENST00000526553 F3P13726 295 aa3.83□□□□□ -1.8
CD44-223ENST00000526553 CTNNB1P35222 781 aa3.83□□□□□ -1.8
CD44-223ENST00000526553 NPBWR1P48145 328 aa3.83□□□□□ -1.8
CD44-223ENST00000526553 NT5C2P49902 561 aa3.83□□□□□ -1.8
CD44-223ENST00000526553 LASP1Q14847 261 aaKnown RBP3.83□□□□□ -1.8
CD44-223ENST00000526553 PKN2Q16513 984 aaKnown RBP3.83□□□□□ -1.8
CD44-223ENST00000526553 SLC39A12Q504Y0 691 aa3.83□□□□□ -1.8
CD44-223ENST00000526553 FGD3Q5JSP0 725 aa3.83□□□□□ -1.8
CD44-223ENST00000526553 OR4C11Q6IEV9 310 aa3.83□□□□□ -1.8
CD44-223ENST00000526553 CYB5D1Q6P9G0 228 aa3.83□□□□□ -1.8
CD44-223ENST00000526553 GET4Q7L5D6 327 aaPredicted RBP3.83□□□□□ -1.8
CD44-223ENST00000526553 ERC1Q8IUD2 1116 aa3.83□□□□□ -1.8
CD44-223ENST00000526553 RTL3Q8N8U3 475 aaKnown RBP3.83□□□□□ -1.8
CD44-223ENST00000526553 C17orf47Q8NEP4 570 aa3.83□□□□□ -1.8
CD44-223ENST00000526553 OR4C15Q8NGM1 316 aa3.83□□□□□ -1.8
CD44-223ENST00000526553 OR10G7Q8NGN6 311 aa3.83□□□□□ -1.8
CD44-223ENST00000526553 RASL10AQ92737 203 aa3.83□□□□□ -1.8
CD44-223ENST00000526553 CACNG6Q9BXT2 260 aa3.83□□□□□ -1.8
CD44-223ENST00000526553 PARLQ9H300 379 aa3.83□□□□□ -1.8
CD44-223ENST00000526553 THAP9Q9H5L6 903 aa3.83□□□□□ -1.8
CD44-223ENST00000526553 RNF121Q9H920 327 aa3.83□□□□□ -1.8
CD44-223ENST00000526553 RNPEPL1Q9HAU8 725 aa3.83□□□□□ -1.8
CD44-223ENST00000526553 SPG21Q9NZD8 308 aa3.83□□□□□ -1.8
CD44-223ENST00000526553 PKD2L2Q9NZM6 624 aa3.83□□□□□ -1.8
CD44-223ENST00000526553 HACD3Q9P035 362 aa3.83□□□□□ -1.8
CD44-223ENST00000526553 PILRBQ9UKJ0 227 aa3.83□□□□□ -1.8
CD44-223ENST00000526553 ODF2LQ9ULJ1 636 aa3.83□□□□□ -1.8
CD44-223ENST00000526553 ZCCHC6Q5VYS8 1495 aaKnown RBP3.82□□□□□ -1.8
CD44-223ENST00000526553 NPHP3Q7Z494 1330 aa3.82□□□□□ -1.8
CD44-223ENST00000526553 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP3.82□□□□□ -1.8
CD44-223ENST00000526553 ILVBLA1L0T0 632 aa3.82□□□□□ -1.8
CD44-223ENST00000526553 FAM149AA5PLN7 773 aa3.82□□□□□ -1.8
CD44-223ENST00000526553 MOCS2O96007 188 aaPredicted RBP3.82□□□□□ -1.8
CD44-223ENST00000526553 IGHV3-13P01766 116 aa3.82□□□□□ -1.8
CD44-223ENST00000526553 YES1P07947 543 aa3.82□□□□□ -1.8
CD44-223ENST00000526553 VCLP18206 1134 aa3.82□□□□□ -1.8
CD44-223ENST00000526553 IL10P22301 178 aa3.82□□□□□ -1.8
CD44-223ENST00000526553 CALRP27797 417 aaKnown RBP3.82□□□□□ -1.8
CD44-223ENST00000526553 PSMB4P28070 264 aa3.82□□□□□ -1.8
CD44-223ENST00000526553 PGFP49763 221 aa3.82□□□□□ -1.8
CD44-223ENST00000526553 SULT2A1Q06520 285 aa3.82□□□□□ -1.8
CD44-223ENST00000526553 ARHGAP1Q07960 439 aa3.82□□□□□ -1.8
CD44-223ENST00000526553 RIGQ13278 110 aa3.82□□□□□ -1.8
CD44-223ENST00000526553 ZNF177Q13360 481 aaPredicted RBP3.82□□□□□ -1.8
CD44-223ENST00000526553 ZNF239Q16600 458 aaKnown RBP3.82□□□□□ -1.8
CD44-223ENST00000526553 IQCCQ4KMZ1 466 aa3.82□□□□□ -1.8
CD44-223ENST00000526553 PARP10Q53GL7 1025 aa3.82□□□□□ -1.8
CD44-223ENST00000526553 LRRC38Q5VT99 294 aa3.82□□□□□ -1.8
CD44-223ENST00000526553 ETFRF1Q6IPR1 90 aa3.82□□□□□ -1.8
CD44-223ENST00000526553 C3P1Q6ZMU1 363 aa3.82□□□□□ -1.8
CD44-223ENST00000526553 CDC20BQ86Y33 519 aa3.82□□□□□ -1.8
CD44-223ENST00000526553 LMNTD2Q8IXW0 634 aa3.82□□□□□ -1.8
CD44-223ENST00000526553 ZNF619Q8N2I2 560 aa3.82□□□□□ -1.8
CD44-223ENST00000526553 CKAP2Q8WWK9 683 aa3.82□□□□□ -1.8
CD44-223ENST00000526553 BCL2L2Q92843 193 aaPredicted RBP3.82□□□□□ -1.8
CD44-223ENST00000526553 SGF29Q96ES7 293 aa3.82□□□□□ -1.8
CD44-223ENST00000526553 GDAP1L1Q96MZ0 367 aa3.82□□□□□ -1.8
CD44-223ENST00000526553 SOSTQ9BQB4 213 aa3.82□□□□□ -1.8
CD44-223ENST00000526553 ATG101Q9BSB4 218 aa3.82□□□□□ -1.8
CD44-223ENST00000526553 SPXQ9BT56 116 aa3.82□□□□□ -1.8
CD44-223ENST00000526553 RPS10P5Q9NQ39 176 aa3.82□□□□□ -1.8
CD44-223ENST00000526553 SLC7A10Q9NS82 523 aa3.82□□□□□ -1.8
CD44-223ENST00000526553 IL19Q9UHD0 177 aa3.82□□□□□ -1.8
CD44-223ENST00000526553 FBXL4Q9UKA2 621 aa3.82□□□□□ -1.8
CD44-223ENST00000526553 APPL1Q9UKG1 709 aa3.82□□□□□ -1.8
CD44-223ENST00000526553 FBXW2Q9UKT8 454 aa3.82□□□□□ -1.8
CD44-223ENST00000526553 GPR132Q9UNW8 380 aa3.82□□□□□ -1.8
CD44-223ENST00000526553 PCDHGA1Q9Y5H4 931 aa3.82□□□□□ -1.8
CD44-223ENST00000526553 HEG1Q9ULI3 1381 aa3.81□□□□□ -1.8
CD44-223ENST00000526553 IGHV4-30-2A0A087WSY4 118 aa3.81□□□□□ -1.8
CD44-223ENST00000526553 TMEM150CB9EJG8 249 aa3.81□□□□□ -1.8
CD44-223ENST00000526553 G3V2L1 256 aa3.81□□□□□ -1.8
CD44-223ENST00000526553 TTI1O43156 1089 aa3.81□□□□□ -1.8
CD44-223ENST00000526553 HPRP00739 348 aa3.81□□□□□ -1.8
CD44-223ENST00000526553 STAG3L1P0CL83 205 aa3.81□□□□□ -1.8
CD44-223ENST00000526553 P4HA1P13674 534 aa3.81□□□□□ -1.8
CD44-223ENST00000526553 LBPP18428 481 aa3.81□□□□□ -1.8
CD44-223ENST00000526553 EDNRAP25101 427 aa3.81□□□□□ -1.8
CD44-223ENST00000526553 PTGER3P43115 390 aa3.81□□□□□ -1.8
CD44-223ENST00000526553 KRTAP10-3P60369 221 aa3.81□□□□□ -1.8
CD44-223ENST00000526553 DHODHQ02127 395 aa3.81□□□□□ -1.8
CD44-223ENST00000526553 FAM189A2Q15884 450 aa3.81□□□□□ -1.8
CD44-223ENST00000526553 AARDQ4LEZ3 155 aa3.81□□□□□ -1.8
CD44-223ENST00000526553 LBHQ53QV2 105 aaPredicted RBP3.81□□□□□ -1.8
CD44-223ENST00000526553 ATP1A1-AS1Q5TC04 95 aa3.81□□□□□ -1.8
CD44-223ENST00000526553 RAB12Q6IQ22 244 aa3.81□□□□□ -1.8
CD44-223ENST00000526553 PIGWQ7Z7B1 504 aa3.81□□□□□ -1.8
CD44-223ENST00000526553 PEX5LQ8IYB4 626 aa3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms