RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 VPS4AQ9UN37 437 aa10.81□□□□□ -0.68
VCAN-212ENST00000515397 IKBKGQ9Y6K9 419 aa10.81□□□□□ -0.68
VCAN-212ENST00000515397 SVILO95425 2214 aa10.81□□□□□ -0.68
VCAN-212ENST00000515397 ESPL1Q14674 2120 aa10.81□□□□□ -0.68
VCAN-212ENST00000515397 SHANK1Q9Y566 2161 aa10.8□□□□□ -0.68
VCAN-212ENST00000515397 A0A087WUV0 522 aaPredicted RBP10.8□□□□□ -0.68
VCAN-212ENST00000515397 URADA6NGE7 173 aa10.8□□□□□ -0.68
VCAN-212ENST00000515397 PSMD12O00232 456 aaPredicted RBP10.8□□□□□ -0.68
VCAN-212ENST00000515397 PRMT3O60678 531 aa10.8□□□□□ -0.68
VCAN-212ENST00000515397 WDPCPO95876 746 aa10.8□□□□□ -0.68
VCAN-212ENST00000515397 MYBL2P10244 700 aa10.8□□□□□ -0.68
VCAN-212ENST00000515397 RNH1P13489 461 aaKnown RBP10.8□□□□□ -0.68
VCAN-212ENST00000515397 CERS1P27544 350 aa10.8□□□□□ -0.68
VCAN-212ENST00000515397 PPP2R1BP30154 601 aa10.8□□□□□ -0.68
VCAN-212ENST00000515397 SOX11P35716 441 aa10.8□□□□□ -0.68
VCAN-212ENST00000515397 STXBP1P61764 594 aaKnown RBP10.8□□□□□ -0.68
VCAN-212ENST00000515397 ARG2P78540 354 aa10.8□□□□□ -0.68
VCAN-212ENST00000515397 ZNF33BQ06732 778 aa10.8□□□□□ -0.68
VCAN-212ENST00000515397 MFAP5Q13361 173 aa10.8□□□□□ -0.68
VCAN-212ENST00000515397 ACAP2Q15057 778 aa10.8□□□□□ -0.68
VCAN-212ENST00000515397 HIST2H2ACQ16777 129 aaPredicted RBP10.8□□□□□ -0.68
VCAN-212ENST00000515397 HIST2H2AA3Q6FI13 130 aa10.8□□□□□ -0.68
VCAN-212ENST00000515397 PAPD4Q6PIY7 484 aaKnown RBP10.8□□□□□ -0.68
VCAN-212ENST00000515397 IGFL2Q6UWQ7 119 aa10.8□□□□□ -0.68
VCAN-212ENST00000515397 CEP128Q6ZU80 1094 aa10.8□□□□□ -0.68
VCAN-212ENST00000515397 LRRC70Q7Z2Q7 622 aa10.8□□□□□ -0.68
VCAN-212ENST00000515397 UBE3DQ7Z6J8 389 aa10.8□□□□□ -0.68
VCAN-212ENST00000515397 CLNKQ7Z7G1 428 aa10.8□□□□□ -0.68
VCAN-212ENST00000515397 IQCKQ8N0W5 287 aa10.8□□□□□ -0.68
VCAN-212ENST00000515397 KIF2BQ8N4N8 673 aa10.8□□□□□ -0.68
VCAN-212ENST00000515397 TM9SF4Q92544 642 aa10.8□□□□□ -0.68
VCAN-212ENST00000515397 GAL3ST3Q96A11 431 aa10.8□□□□□ -0.68
VCAN-212ENST00000515397 MTFMTQ96DP5 389 aaKnown RBP10.8□□□□□ -0.68
VCAN-212ENST00000515397 QRFPRQ96P65 431 aa10.8□□□□□ -0.68
VCAN-212ENST00000515397 OR1F2PQ96R84 312 aa10.8□□□□□ -0.68
VCAN-212ENST00000515397 TUBB6Q9BUF5 446 aa10.8□□□□□ -0.68
VCAN-212ENST00000515397 REXO4Q9GZR2 422 aaKnown RBP10.8□□□□□ -0.68
VCAN-212ENST00000515397 OR51B5Q9H339 312 aa10.8□□□□□ -0.68
VCAN-212ENST00000515397 NT5DC2Q9H857 520 aa10.8□□□□□ -0.68
VCAN-212ENST00000515397 STMN3Q9NZ72 180 aa10.8□□□□□ -0.68
VCAN-212ENST00000515397 C19orf25Q9UFG5 118 aaPredicted RBP10.8□□□□□ -0.68
VCAN-212ENST00000515397 ANGPTL3Q9Y5C1 460 aa10.8□□□□□ -0.68
VCAN-212ENST00000515397 COPG1Q9Y678 874 aaKnown RBP10.8□□□□□ -0.68
VCAN-212ENST00000515397 ASH1LQ9NR48 2969 aaKnown RBP10.79□□□□□ -0.68
VCAN-212ENST00000515397 EXOC1LA0A1B0GW35 172 aa10.79□□□□□ -0.68
VCAN-212ENST00000515397 A0A1W2PQ72 361 aa10.79□□□□□ -0.68
VCAN-212ENST00000515397 CYSRT1A8MQ03 144 aa10.79□□□□□ -0.68
VCAN-212ENST00000515397 MAGEB17A8MXT2 336 aa10.79□□□□□ -0.68
VCAN-212ENST00000515397 TGFBR3LH3BV60 316 aa10.79□□□□□ -0.68
VCAN-212ENST00000515397 KLHL41O60662 606 aa10.79□□□□□ -0.68
VCAN-212ENST00000515397 CLEC3AO75596 197 aa10.79□□□□□ -0.68
VCAN-212ENST00000515397 EPB42P16452 691 aa10.79□□□□□ -0.68
VCAN-212ENST00000515397 TSPAN8P19075 237 aa10.79□□□□□ -0.68
VCAN-212ENST00000515397 EEF1DP29692 281 aaKnown RBP10.79□□□□□ -0.68
VCAN-212ENST00000515397 NEK2P51955 445 aa10.79□□□□□ -0.68
VCAN-212ENST00000515397 SLC29A2Q14542 456 aa10.79□□□□□ -0.68
VCAN-212ENST00000515397 SETDB1Q15047 1291 aa10.79□□□□□ -0.68
VCAN-212ENST00000515397 NR6A1Q15406 480 aa10.79□□□□□ -0.68
VCAN-212ENST00000515397 TECRLQ5HYJ1 363 aa10.79□□□□□ -0.68
VCAN-212ENST00000515397 CRB2Q5IJ48 1285 aa10.79□□□□□ -0.68
VCAN-212ENST00000515397 TEX35Q5T0J7 233 aa10.79□□□□□ -0.68
VCAN-212ENST00000515397 KLC3Q6P597 504 aa10.79□□□□□ -0.68
VCAN-212ENST00000515397 ABHD17CQ6PCB6 329 aa10.79□□□□□ -0.68
VCAN-212ENST00000515397 ZNF793Q6ZN11 406 aa10.79□□□□□ -0.68
VCAN-212ENST00000515397 ATCAYQ86WG3 371 aa10.79□□□□□ -0.68
VCAN-212ENST00000515397 HPS6Q86YV9 775 aa10.79□□□□□ -0.68
VCAN-212ENST00000515397 PTGR2Q8N8N7 351 aaPredicted RBP10.79□□□□□ -0.68
VCAN-212ENST00000515397 TTLQ8NG68 377 aa10.79□□□□□ -0.68
VCAN-212ENST00000515397 OR7G3Q8NG95 312 aa10.79□□□□□ -0.68
VCAN-212ENST00000515397 RHEBL1Q8TAI7 183 aa10.79□□□□□ -0.68
VCAN-212ENST00000515397 PPP4R1Q8TF05 950 aa10.79□□□□□ -0.68
VCAN-212ENST00000515397 ZNF473Q8WTR7 871 aaKnown RBP10.79□□□□□ -0.68
VCAN-212ENST00000515397 UBTD2Q8WUN7 234 aa10.79□□□□□ -0.68
VCAN-212ENST00000515397 WDR34Q96EX3 536 aa10.79□□□□□ -0.68
VCAN-212ENST00000515397 NSUN5Q96P11 429 aaKnown RBP10.79□□□□□ -0.68
VCAN-212ENST00000515397 CDK15Q96Q40 435 aa10.79□□□□□ -0.68
VCAN-212ENST00000515397 LMF1Q96S06 567 aa10.79□□□□□ -0.68
VCAN-212ENST00000515397 CSF3RQ99062 836 aa10.79□□□□□ -0.68
VCAN-212ENST00000515397 MTERF1Q99551 399 aaKnown RBP10.79□□□□□ -0.68
VCAN-212ENST00000515397 NPAS2Q99743 824 aa10.79□□□□□ -0.68
VCAN-212ENST00000515397 EFCAB11Q9BUY7 163 aa10.79□□□□□ -0.68
VCAN-212ENST00000515397 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP10.79□□□□□ -0.68
VCAN-212ENST00000515397 EHD1Q9H4M9 534 aa10.79□□□□□ -0.68
VCAN-212ENST00000515397 KCNK13Q9HB14 408 aa10.79□□□□□ -0.68
VCAN-212ENST00000515397 PRDM7Q9NQW5 492 aa10.79□□□□□ -0.68
VCAN-212ENST00000515397 PNO1Q9NRX1 252 aaKnown RBP10.79□□□□□ -0.68
VCAN-212ENST00000515397 RNF11Q9Y3C5 154 aa10.79□□□□□ -0.68
VCAN-212ENST00000515397 PCDHGA10Q9Y5H3 936 aa10.79□□□□□ -0.68
VCAN-212ENST00000515397 PTPN13Q12923 2485 aa10.79□□□□□ -0.68
VCAN-212ENST00000515397 DYTNA2CJ06 578 aa10.78□□□□□ -0.68
VCAN-212ENST00000515397 WASHC1A8K0Z3 465 aa10.78□□□□□ -0.68
VCAN-212ENST00000515397 SYCE1LA8MT33 242 aa10.78□□□□□ -0.68
VCAN-212ENST00000515397 GOLGA8RI6L899 631 aa10.78□□□□□ -0.68
VCAN-212ENST00000515397 PPP6CO00743 305 aa10.78□□□□□ -0.68
VCAN-212ENST00000515397 RIPK2O43353 540 aa10.78□□□□□ -0.68
VCAN-212ENST00000515397 B3GALT2O43825 422 aa10.78□□□□□ -0.68
VCAN-212ENST00000515397 KRT38O76015 456 aa10.78□□□□□ -0.68
VCAN-212ENST00000515397 WISP2O76076 250 aa10.78□□□□□ -0.68
VCAN-212ENST00000515397 SNRPAP09012 282 aaKnown RBP10.78□□□□□ -0.68
VCAN-212ENST00000515397 ICAM2P13598 275 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms