RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 MAGIXQ9H6Y5 334 aa11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 PLCXD1Q9NUJ7 323 aa11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 C1orf109Q9NX04 203 aa11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 ZNF624Q9P2J8 865 aaPredicted RBP11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 ENTPD4Q9Y227 616 aa11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 PCDHGB7Q9Y5F8 929 aa11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 ITGB4P16144 1822 aa11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 H0YCG3 227 aa11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 AIPO00170 330 aa11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 LRRTM2O43300 516 aa11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 OR4F21O95013 312 aa11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 FABP3P05413 133 aa11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 KLK3P07288 261 aaPredicted RBP11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 TKTL1P51854 596 aa11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 SNRPEP62304 92 aaKnown RBP11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 MC2RQ01718 297 aa11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 LCP2Q13094 533 aa11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 PTGR1Q14914 329 aa11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 TRAM2Q15035 370 aa11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 NR6A1Q15406 480 aa11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 OR4F3Q6IEY1 312 aa11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 SUSD1Q6UWL2 747 aa11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 KRT78Q8N1N4 520 aa11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 C2CD4AQ8NCU7 369 aaPredicted RBP11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 SLC13A3Q8WWT9 602 aa11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 BRINP2Q9C0B6 783 aa11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 METTL17Q9H7H0 456 aaPredicted RBP11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 ZNF226Q9NYT6 803 aa11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 SLC6A5Q9Y345 797 aa11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 CFAP20Q9Y6A4 193 aaKnown RBP11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 MRPL42Q9Y6G3 142 aaKnown RBP11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 STYXL1Q9Y6J8 313 aa11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 NUP205Q92621 2012 aa11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 TEX13CA0A0J9YWL9 993 aa11.58□□□□□ -0.55
LIMCH1-213ENST00000511496 A0A1B0GVC2 190 aa11.58□□□□□ -0.55
LIMCH1-213ENST00000511496 A6NIN4 97 aa11.58□□□□□ -0.55
LIMCH1-213ENST00000511496 OR6C75A6NL08 312 aa11.58□□□□□ -0.55
LIMCH1-213ENST00000511496 FGF2P09038 288 aa11.58□□□□□ -0.55
LIMCH1-213ENST00000511496 HBQ1P09105 142 aa11.58□□□□□ -0.55
LIMCH1-213ENST00000511496 CHRNA4P43681 627 aa11.58□□□□□ -0.55
LIMCH1-213ENST00000511496 RAB8AP61006 207 aa11.58□□□□□ -0.55
LIMCH1-213ENST00000511496 CACNB2Q08289 660 aaPredicted RBP11.58□□□□□ -0.55
LIMCH1-213ENST00000511496 LGALS3BPQ08380 585 aa11.58□□□□□ -0.55
LIMCH1-213ENST00000511496 ZNF549Q6P9A3 640 aa11.58□□□□□ -0.55
LIMCH1-213ENST00000511496 TMIGD1Q6UXZ0 262 aa11.58□□□□□ -0.55
LIMCH1-213ENST00000511496 CPXCR1Q8N123 301 aa11.58□□□□□ -0.55
LIMCH1-213ENST00000511496 CA5BP1Q8WTZ4 195 aa11.58□□□□□ -0.55
LIMCH1-213ENST00000511496 NDRG1Q92597 394 aaKnown RBP11.58□□□□□ -0.55
LIMCH1-213ENST00000511496 TSPAN17Q96FV3 270 aa11.58□□□□□ -0.55
LIMCH1-213ENST00000511496 DDOQ99489 341 aa11.58□□□□□ -0.55
LIMCH1-213ENST00000511496 SEMA4CQ9C0C4 833 aa11.58□□□□□ -0.55
LIMCH1-213ENST00000511496 SLC25A37Q9NYZ2 338 aa11.58□□□□□ -0.55
LIMCH1-213ENST00000511496 GALPQ9UBC7 116 aa11.58□□□□□ -0.55
LIMCH1-213ENST00000511496 MRTO4Q9UKD2 239 aaKnown RBP11.58□□□□□ -0.55
LIMCH1-213ENST00000511496 STUB1Q9UNE7 303 aa11.58□□□□□ -0.55
LIMCH1-213ENST00000511496 PCDHGA2Q9Y5H1 932 aa11.58□□□□□ -0.55
LIMCH1-213ENST00000511496 LACTBL1A8MY62 500 aa11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 L7N2F9 121 aa11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 ACKR2O00590 384 aa11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 DPYSL4O14531 572 aa11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 S100PP25815 95 aa11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 AKT1P31749 480 aa11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 ALKBH1Q13686 389 aaKnown RBP11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 OR4D1Q15615 310 aa11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 AKIRIN2Q53H80 203 aa11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 NOMO2Q5JPE7 1267 aa11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 TRIM69Q86WT6 500 aa11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 BOLLQ8N9W6 283 aaKnown RBP11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 C1GALT1C1Q96EU7 318 aa11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 PFDN5Q99471 154 aa11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 FEVQ99581 238 aa11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 FICDQ9BVA6 458 aa11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 BTBD1Q9H0C5 482 aa11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 SAP130Q9H0E3 1048 aa11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 GABARAPL1Q9H0R8 117 aa11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 DLL4Q9NR61 685 aa11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 ABCC13Q9NSE7 274 aa11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 RNF146Q9NTX7 359 aa11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 OR6C2Q9NZP2 312 aa11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 MBD2Q9UBB5 411 aa11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 YARS2Q9Y2Z4 477 aaKnown RBP11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 GATBO75879 557 aaKnown RBP11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 FPR3P25089 353 aa11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 PGDP52209 483 aa11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 SOX4Q06945 474 aaPredicted RBP11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 PUM1Q14671 1186 aaKnown RBP eCLIP11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 SPHARQ15513 63 aa11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 SOWAHAQ2M3V2 549 aa11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 RNASE12Q5GAN4 147 aaKnown RBP11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 SLC6A19Q695T7 634 aa11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 FAM198BQ6UWH4 519 aa11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 ANKRD46Q86W74 232 aa11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 C9orf43Q8TAL5 461 aaPredicted RBP11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 ZDHHC1Q8WTX9 485 aa11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 MRPS24Q96EL2 167 aaKnown RBP11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 MSLNLQ96KJ4 702 aa11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 C12orf66Q96MD2 445 aa11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 GAS2L1Q99501 681 aaPredicted RBP11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 PPP1R3EQ9H7J1 279 aa11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 TXNL4BQ9NX01 149 aaKnown RBP11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms