RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 KIR3DP1A8MWS1 328 aa13.68□□□□□ -0.22
TRAF4-212ENST00000498540 GOLGA8MH3BSY2 632 aa13.68□□□□□ -0.22
TRAF4-212ENST00000498540 PRKNO60260 465 aaPredicted RBP13.68□□□□□ -0.22
TRAF4-212ENST00000498540 TUBB4AP04350 444 aa13.68□□□□□ -0.22
TRAF4-212ENST00000498540 SCTRP47872 440 aa13.68□□□□□ -0.22
TRAF4-212ENST00000498540 RGS4P49798 205 aa13.68□□□□□ -0.22
TRAF4-212ENST00000498540 DLX5P56178 289 aa13.68□□□□□ -0.22
TRAF4-212ENST00000498540 FOLH1Q04609 750 aa13.68□□□□□ -0.22
TRAF4-212ENST00000498540 GPS1Q13098 491 aa13.68□□□□□ -0.22
TRAF4-212ENST00000498540 GXYLT1Q4G148 440 aa13.68□□□□□ -0.22
TRAF4-212ENST00000498540 NIPAL1Q6NVV3 410 aa13.68□□□□□ -0.22
TRAF4-212ENST00000498540 PAQR3Q6TCH7 311 aa13.68□□□□□ -0.22
TRAF4-212ENST00000498540 KIAA0408Q6ZU52 694 aa13.68□□□□□ -0.22
TRAF4-212ENST00000498540 STRA8Q7Z7C7 330 aa13.68□□□□□ -0.22
TRAF4-212ENST00000498540 PALM2Q8IXS6 379 aa13.68□□□□□ -0.22
TRAF4-212ENST00000498540 CLYBLQ8N0X4 340 aa13.68□□□□□ -0.22
TRAF4-212ENST00000498540 CA13Q8N1Q1 262 aa13.68□□□□□ -0.22
TRAF4-212ENST00000498540 MYO1HQ8N1T3 1032 aa13.68□□□□□ -0.22
TRAF4-212ENST00000498540 ANKRD53Q8N9V6 530 aa13.68□□□□□ -0.22
TRAF4-212ENST00000498540 PSD4Q8NDX1 1056 aa13.68□□□□□ -0.22
TRAF4-212ENST00000498540 OR5M9Q8NGP3 310 aa13.68□□□□□ -0.22
TRAF4-212ENST00000498540 OR56A3Q8NH54 315 aa13.68□□□□□ -0.22
TRAF4-212ENST00000498540 NEIL2Q969S2 332 aa13.68□□□□□ -0.22
TRAF4-212ENST00000498540 PDLIM2Q96JY6 352 aa13.68□□□□□ -0.22
TRAF4-212ENST00000498540 SLC6A16Q9GZN6 736 aa13.68□□□□□ -0.22
TRAF4-212ENST00000498540 KLHL31Q9H511 634 aa13.68□□□□□ -0.22
TRAF4-212ENST00000498540 ZDHHC11Q9H8X9 412 aa13.68□□□□□ -0.22
TRAF4-212ENST00000498540 LIN28AQ9H9Z2 209 aaKnown RBP13.68□□□□□ -0.22
TRAF4-212ENST00000498540 TIMMDC1Q9NPL8 285 aa13.68□□□□□ -0.22
TRAF4-212ENST00000498540 DNAJB12Q9NXW2 375 aaKnown RBP13.68□□□□□ -0.22
TRAF4-212ENST00000498540 ZFP69BQ9UJL9 534 aa13.68□□□□□ -0.22
TRAF4-212ENST00000498540 L3MBTL1Q9Y468 752 aa13.68□□□□□ -0.22
TRAF4-212ENST00000498540 LIPGQ9Y5X9 500 aa13.68□□□□□ -0.22
TRAF4-212ENST00000498540 ABCA2Q9BZC7 2435 aa13.68□□□□□ -0.22
TRAF4-212ENST00000498540 FLNAP21333 2647 aaKnown RBP13.67□□□□□ -0.22
TRAF4-212ENST00000498540 MAGEB16A2A368 324 aa13.67□□□□□ -0.22
TRAF4-212ENST00000498540 G3V3Y1 287 aa13.67□□□□□ -0.22
TRAF4-212ENST00000498540 TGFBR3LH3BV60 316 aa13.67□□□□□ -0.22
TRAF4-212ENST00000498540 PSMD12O00232 456 aaPredicted RBP13.67□□□□□ -0.22
TRAF4-212ENST00000498540 SLC16A5O15375 505 aa13.67□□□□□ -0.22
TRAF4-212ENST00000498540 SMIM10L1P0DMW3 83 aa13.67□□□□□ -0.22
TRAF4-212ENST00000498540 MLNP12872 115 aa13.67□□□□□ -0.22
TRAF4-212ENST00000498540 ACVR2AP27037 513 aa13.67□□□□□ -0.22
TRAF4-212ENST00000498540 PPP2R1BP30154 601 aa13.67□□□□□ -0.22
TRAF4-212ENST00000498540 SSR4P51571 173 aa13.67□□□□□ -0.22
TRAF4-212ENST00000498540 CDKN2DP55273 166 aa13.67□□□□□ -0.22
TRAF4-212ENST00000498540 PPIAP62937 165 aaKnown RBP13.67□□□□□ -0.22
TRAF4-212ENST00000498540 PLGLB1Q02325 96 aa13.67□□□□□ -0.22
TRAF4-212ENST00000498540 TERF2Q15554 542 aa13.67□□□□□ -0.22
TRAF4-212ENST00000498540 CEBPEQ15744 281 aa13.67□□□□□ -0.22
TRAF4-212ENST00000498540 HSP90AA5PQ58FG0 334 aa13.67□□□□□ -0.22
TRAF4-212ENST00000498540 RBM20Q5T481 1227 aaKnown RBP13.67□□□□□ -0.22
TRAF4-212ENST00000498540 DUPD1Q68J44 220 aa13.67□□□□□ -0.22
TRAF4-212ENST00000498540 LMNTD2Q8IXW0 634 aa13.67□□□□□ -0.22
TRAF4-212ENST00000498540 CHDHQ8NE62 594 aaPredicted RBP13.67□□□□□ -0.22
TRAF4-212ENST00000498540 ARMC2Q8NEN0 867 aa13.67□□□□□ -0.22
TRAF4-212ENST00000498540 OR2M7Q8NG81 312 aa13.67□□□□□ -0.22
TRAF4-212ENST00000498540 OR10Q1Q8NGQ4 319 aa13.67□□□□□ -0.22
TRAF4-212ENST00000498540 CALML6Q8TD86 181 aa13.67□□□□□ -0.22
TRAF4-212ENST00000498540 NINJ1Q92982 152 aa13.67□□□□□ -0.22
TRAF4-212ENST00000498540 NCLNQ969V3 563 aa13.67□□□□□ -0.22
TRAF4-212ENST00000498540 LINGO1Q96FE5 620 aa13.67□□□□□ -0.22
TRAF4-212ENST00000498540 VMP1Q96GC9 406 aa13.67□□□□□ -0.22
TRAF4-212ENST00000498540 SMIM10Q96HG1 83 aa13.67□□□□□ -0.22
TRAF4-212ENST00000498540 TSNARE1Q96NA8 513 aa13.67□□□□□ -0.22
TRAF4-212ENST00000498540 SERPINB12Q96P63 405 aa13.67□□□□□ -0.22
TRAF4-212ENST00000498540 TTYH2Q9BSA4 534 aa13.67□□□□□ -0.22
TRAF4-212ENST00000498540 AICDAQ9GZX7 198 aa13.67□□□□□ -0.22
TRAF4-212ENST00000498540 GSX1Q9H4S2 264 aaPredicted RBP13.67□□□□□ -0.22
TRAF4-212ENST00000498540 PNO1Q9NRX1 252 aaKnown RBP13.67□□□□□ -0.22
TRAF4-212ENST00000498540 IARS2Q9NSE4 1012 aaKnown RBP13.67□□□□□ -0.22
TRAF4-212ENST00000498540 ZNF358Q9NW07 568 aa13.67□□□□□ -0.22
TRAF4-212ENST00000498540 ARL15Q9NXU5 204 aa13.67□□□□□ -0.22
TRAF4-212ENST00000498540 PPIEQ9UNP9 301 aaKnown RBP13.67□□□□□ -0.22
TRAF4-212ENST00000498540 ERVK-11Q9UQG0 969 aa13.67□□□□□ -0.22
TRAF4-212ENST00000498540 FAM215AQ9Y5M1 114 aa13.67□□□□□ -0.22
TRAF4-212ENST00000498540 A0A0G2JNJ9 132 aa13.66□□□□□ -0.22
TRAF4-212ENST00000498540 TMEM200CA6NKL6 621 aa13.66□□□□□ -0.22
TRAF4-212ENST00000498540 A8MVJ9 347 aa13.66□□□□□ -0.22
TRAF4-212ENST00000498540 ACOT7O00154 380 aa13.66□□□□□ -0.22
TRAF4-212ENST00000498540 CTAG2O75638 210 aa13.66□□□□□ -0.22
TRAF4-212ENST00000498540 OR2J2O76002 312 aa13.66□□□□□ -0.22
TRAF4-212ENST00000498540 OR6B1O95007 311 aa13.66□□□□□ -0.22
TRAF4-212ENST00000498540 HIST1H2AGP0C0S8 130 aaPredicted RBP13.66□□□□□ -0.22
TRAF4-212ENST00000498540 GLI4P10075 376 aa13.66□□□□□ -0.22
TRAF4-212ENST00000498540 HIST1H2ADP20671 130 aa13.66□□□□□ -0.22
TRAF4-212ENST00000498540 AHRP35869 848 aa13.66□□□□□ -0.22
TRAF4-212ENST00000498540 GPR143P51810 404 aa13.66□□□□□ -0.22
TRAF4-212ENST00000498540 PGGT1BP53609 377 aa13.66□□□□□ -0.22
TRAF4-212ENST00000498540 PPP2R2AP63151 447 aa13.66□□□□□ -0.22
TRAF4-212ENST00000498540 REEP5Q00765 189 aa13.66□□□□□ -0.22
TRAF4-212ENST00000498540 FOXD4Q12950 439 aaPredicted RBP13.66□□□□□ -0.22
TRAF4-212ENST00000498540 SNTB1Q13884 538 aaKnown RBP13.66□□□□□ -0.22
TRAF4-212ENST00000498540 XKR6Q5GH73 641 aa13.66□□□□□ -0.22
TRAF4-212ENST00000498540 RTL6Q6ICC9 239 aa13.66□□□□□ -0.22
TRAF4-212ENST00000498540 UGT3A1Q6NUS8 523 aa13.66□□□□□ -0.22
TRAF4-212ENST00000498540 ZNF585AQ6P3V2 769 aa13.66□□□□□ -0.22
TRAF4-212ENST00000498540 PAOXQ6QHF9 649 aa13.66□□□□□ -0.22
TRAF4-212ENST00000498540 LIX1LQ8IVB5 337 aa13.66□□□□□ -0.22
TRAF4-212ENST00000498540 SCUBE1Q8IWY4 988 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms