RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 CCDC159P0C7I6 412 aa15.85■□□□□ 0.13
CCDC88B-210ENST00000494566 FEN1P39748 380 aaKnown RBP15.85■□□□□ 0.13
CCDC88B-210ENST00000494566 SERPINB10P48595 397 aa15.85■□□□□ 0.13
CCDC88B-210ENST00000494566 CDH12P55289 794 aa15.85■□□□□ 0.13
CCDC88B-210ENST00000494566 NPRL3Q12980 569 aa15.85■□□□□ 0.13
CCDC88B-210ENST00000494566 TIGD6Q17RP2 521 aa15.85■□□□□ 0.13
CCDC88B-210ENST00000494566 FAM214AQ32MH5 1076 aa15.85■□□□□ 0.13
CCDC88B-210ENST00000494566 CPTPQ5TA50 214 aa15.85■□□□□ 0.13
CCDC88B-210ENST00000494566 RAET1GQ6H3X3 334 aa15.85■□□□□ 0.13
CCDC88B-210ENST00000494566 DPPA4Q7L190 304 aa15.85■□□□□ 0.13
CCDC88B-210ENST00000494566 SERPINA11Q86U17 422 aa15.85■□□□□ 0.13
CCDC88B-210ENST00000494566 NAGSQ8N159 534 aa15.85■□□□□ 0.13
CCDC88B-210ENST00000494566 TPK1Q9H3S4 243 aa15.85■□□□□ 0.13
CCDC88B-210ENST00000494566 IL1RAPQ9NPH3 570 aa15.85■□□□□ 0.13
CCDC88B-210ENST00000494566 EXO1Q9UQ84 846 aaKnown RBP15.85■□□□□ 0.13
CCDC88B-210ENST00000494566 RNF6Q9Y252 685 aa15.85■□□□□ 0.13
CCDC88B-210ENST00000494566 CFAP20Q9Y6A4 193 aaKnown RBP15.85■□□□□ 0.13
CCDC88B-210ENST00000494566 AP3D1O14617 1153 aa15.85■□□□□ 0.13
CCDC88B-210ENST00000494566 SNPHO15079 494 aa15.85■□□□□ 0.13
CCDC88B-210ENST00000494566 SLC16A6O15403 523 aa15.85■□□□□ 0.13
CCDC88B-210ENST00000494566 PCDH7O60245 1069 aa15.85■□□□□ 0.13
CCDC88B-210ENST00000494566 KCNK2O95069 426 aa15.85■□□□□ 0.13
CCDC88B-210ENST00000494566 SOD1P00441 154 aa15.85■□□□□ 0.13
CCDC88B-210ENST00000494566 DCDC1P59894 354 aa15.85■□□□□ 0.13
CCDC88B-210ENST00000494566 DAB2P98082 770 aa15.85■□□□□ 0.13
CCDC88B-210ENST00000494566 SRSF11Q05519 484 aaKnown RBP15.85■□□□□ 0.13
CCDC88B-210ENST00000494566 CSTF3Q12996 717 aaKnown RBP15.85■□□□□ 0.13
CCDC88B-210ENST00000494566 TOP3AQ13472 1001 aaPredicted RBP15.85■□□□□ 0.13
CCDC88B-210ENST00000494566 NUMA1Q14980 2115 aa15.85■□□□□ 0.13
CCDC88B-210ENST00000494566 MED22Q15528 200 aa15.85■□□□□ 0.13
CCDC88B-210ENST00000494566 DESI1Q6ICB0 168 aa15.85■□□□□ 0.13
CCDC88B-210ENST00000494566 GRHL2Q6ISB3 625 aa15.85■□□□□ 0.13
CCDC88B-210ENST00000494566 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP15.85■□□□□ 0.13
CCDC88B-210ENST00000494566 OR52E4Q8NGH9 312 aa15.85■□□□□ 0.13
CCDC88B-210ENST00000494566 WDR48Q8TAF3 677 aa15.85■□□□□ 0.13
CCDC88B-210ENST00000494566 CNDP2Q96KP4 475 aaKnown RBP15.85■□□□□ 0.13
CCDC88B-210ENST00000494566 AP2A2O94973 939 aa15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 TGFBR2P37173 567 aa15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 KCNC4Q03721 635 aa15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 SLBPQ14493 270 aaKnown RBP eCLIP15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 NFE2L1Q14494 772 aa15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 ATAD3BQ5T9A4 648 aa15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 KIAA1614Q5VZ46 1190 aa15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 NEK10Q6ZWH5 1172 aa15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 SETD9Q8NE22 299 aa15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 OR4A15Q8NGL6 344 aa15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 EHD1Q9H4M9 534 aa15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 DUSP21Q9H596 190 aa15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 TRIM39Q9HCM9 518 aa15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 TMEM98Q9Y2Y6 226 aa15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 PLXND1Q9Y4D7 1925 aa15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 M0R082 166 aa15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 RGS5O15539 181 aa15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 C1orf105O95561 183 aa15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 PTHP01270 115 aa15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 ETFAP13804 333 aa15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 MYOGP15173 224 aa15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 GPX2P18283 190 aa15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 RYKP34925 604 aa15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 MAGEA2P43356 314 aa15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 TRPC1P48995 793 aa15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 KDM4DQ6B0I6 523 aa15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 ERAP2Q6P179 960 aa15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 RASGRP3Q8IV61 690 aa15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 SLC5A8Q8N695 610 aa15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 NIPSNAP1Q9BPW8 284 aa15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 PALMDQ9NP74 551 aa15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 PCDHB11Q9Y5F2 797 aa15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 IDSP22304 550 aa15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 DNAJA1P31689 397 aaKnown RBP15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 TTC23LQ6PF05 361 aa15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 SLCO4C1Q6ZQN7 724 aa15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 ARMCX6Q7L4S7 300 aa15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 BCDIN3DQ7Z5W3 292 aaKnown RBP15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 OR8J2Q8NGG1 315 aa15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 DNAJB8Q8NHS0 232 aa15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 ARRDC3Q96B67 414 aa15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 C11orf24Q96F05 449 aaPredicted RBP15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 FCRL1Q96LA6 429 aa15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 FOPNLQ96NB1 174 aa15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 DNMT3AQ9Y6K1 912 aaPredicted RBP15.84■□□□□ 0.13
CCDC88B-210ENST00000494566 H0YIV9 168 aa15.83■□□□□ 0.12
CCDC88B-210ENST00000494566 ADH5P11766 374 aa15.83■□□□□ 0.12
CCDC88B-210ENST00000494566 EPHA5P54756 1037 aa15.83■□□□□ 0.12
CCDC88B-210ENST00000494566 MXD1Q05195 221 aa15.83■□□□□ 0.12
CCDC88B-210ENST00000494566 DMPKQ09013 629 aa15.83■□□□□ 0.12
CCDC88B-210ENST00000494566 DOC2BQ14184 412 aa15.83■□□□□ 0.12
CCDC88B-210ENST00000494566 LYSMD2Q8IV50 215 aa15.83■□□□□ 0.12
CCDC88B-210ENST00000494566 FAM9CQ8IZT9 166 aa15.83■□□□□ 0.12
CCDC88B-210ENST00000494566 OR56A3Q8NH54 315 aa15.83■□□□□ 0.12
CCDC88B-210ENST00000494566 IL4I1Q96RQ9 567 aa15.83■□□□□ 0.12
CCDC88B-210ENST00000494566 C11orf49Q9H6J7 331 aa15.83■□□□□ 0.12
CCDC88B-210ENST00000494566 TBC1D14Q9P2M4 693 aa15.83■□□□□ 0.12
CCDC88B-210ENST00000494566 B3GNT3Q9Y2A9 372 aa15.83■□□□□ 0.12
CCDC88B-210ENST00000494566 MRPS23Q9Y3D9 190 aaKnown RBP15.83■□□□□ 0.12
CCDC88B-210ENST00000494566 KCNE2Q9Y6J6 123 aa15.83■□□□□ 0.12
CCDC88B-210ENST00000494566 PRUNE2Q8WUY3 3088 aa15.83■□□□□ 0.12
CCDC88B-210ENST00000494566 CTDSP2O14595 271 aa15.83■□□□□ 0.12
CCDC88B-210ENST00000494566 TFECO14948 347 aaPredicted RBP15.83■□□□□ 0.12
CCDC88B-210ENST00000494566 C6orf47O95873 294 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms