RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 KRT38O76015 456 aa23.2■■□□□ 1.3
UPF3A-209ENST00000492270 UQCRHP07919 91 aa23.2■■□□□ 1.3
UPF3A-209ENST00000492270 GCAP28676 217 aa23.2■■□□□ 1.3
UPF3A-209ENST00000492270 CASP2P42575 452 aa23.2■■□□□ 1.3
UPF3A-209ENST00000492270 LAPTM5Q13571 262 aa23.2■■□□□ 1.3
UPF3A-209ENST00000492270 NAA30Q147X3 362 aaPredicted RBP23.2■■□□□ 1.3
UPF3A-209ENST00000492270 PAGE2BQ5JRK9 111 aa23.2■■□□□ 1.3
UPF3A-209ENST00000492270 PAPD4Q6PIY7 484 aaKnown RBP23.2■■□□□ 1.3
UPF3A-209ENST00000492270 CISD2Q8N5K1 135 aaKnown RBP23.2■■□□□ 1.3
UPF3A-209ENST00000492270 CATSPER1Q8NEC5 780 aa23.2■■□□□ 1.3
UPF3A-209ENST00000492270 OR2L5Q8NG80 312 aa23.2■■□□□ 1.3
UPF3A-209ENST00000492270 F2RL3Q96RI0 385 aa23.2■■□□□ 1.3
UPF3A-209ENST00000492270 LMF1Q96S06 567 aa23.2■■□□□ 1.3
UPF3A-209ENST00000492270 REXO4Q9GZR2 422 aaKnown RBP23.2■■□□□ 1.3
UPF3A-209ENST00000492270 PLA2G3Q9NZ20 509 aa23.2■■□□□ 1.3
UPF3A-209ENST00000492270 ZNF180Q9UJW8 692 aa23.2■■□□□ 1.3
UPF3A-209ENST00000492270 CCDC189A1A4V9 331 aa23.19■■□□□ 1.3
UPF3A-209ENST00000492270 RIPK2O43353 540 aa23.19■■□□□ 1.3
UPF3A-209ENST00000492270 SH3BGRLO75368 114 aa23.19■■□□□ 1.3
UPF3A-209ENST00000492270 SIX3O95343 332 aaPredicted RBP23.19■■□□□ 1.3
UPF3A-209ENST00000492270 F10P00742 488 aa23.19■■□□□ 1.3
UPF3A-209ENST00000492270 ABHD2P08910 425 aa23.19■■□□□ 1.3
UPF3A-209ENST00000492270 EPB42P16452 691 aa23.19■■□□□ 1.3
UPF3A-209ENST00000492270 MAOAP21397 527 aa23.19■■□□□ 1.3
UPF3A-209ENST00000492270 ALDH18A1P54886 795 aaKnown RBP23.19■■□□□ 1.3
UPF3A-209ENST00000492270 OR4D2P58180 307 aa23.19■■□□□ 1.3
UPF3A-209ENST00000492270 HIST2H2ACQ16777 129 aaPredicted RBP23.19■■□□□ 1.3
UPF3A-209ENST00000492270 PLAG1Q6DJT9 500 aa23.19■■□□□ 1.3
UPF3A-209ENST00000492270 HIST2H2AA3Q6FI13 130 aa23.19■■□□□ 1.3
UPF3A-209ENST00000492270 MAGEB10Q96LZ2 347 aaPredicted RBP23.19■■□□□ 1.3
UPF3A-209ENST00000492270 PTCHD1Q96NR3 888 aa23.19■■□□□ 1.3
UPF3A-209ENST00000492270 CLK4Q9HAZ1 481 aaKnown RBP23.19■■□□□ 1.3
UPF3A-209ENST00000492270 ASH1LQ9NR48 2969 aaKnown RBP23.19■■□□□ 1.3
UPF3A-209ENST00000492270 ASF1BQ9NVP2 202 aa23.19■■□□□ 1.3
UPF3A-209ENST00000492270 NTNG1Q9Y2I2 539 aa23.19■■□□□ 1.3
UPF3A-209ENST00000492270 PSMD12O00232 456 aaPredicted RBP23.18■■□□□ 1.3
UPF3A-209ENST00000492270 PRMT3O60678 531 aa23.18■■□□□ 1.3
UPF3A-209ENST00000492270 VPS4BO75351 444 aa23.18■■□□□ 1.3
UPF3A-209ENST00000492270 PCNAP12004 261 aa23.18■■□□□ 1.3
UPF3A-209ENST00000492270 ICAM2P13598 275 aa23.18■■□□□ 1.3
UPF3A-209ENST00000492270 GNLYP22749 145 aa23.18■■□□□ 1.3
UPF3A-209ENST00000492270 CERS1P27544 350 aa23.18■■□□□ 1.3
UPF3A-209ENST00000492270 TRIM40Q6P9F5 258 aa23.18■■□□□ 1.3
UPF3A-209ENST00000492270 ABHD17CQ6PCB6 329 aa23.18■■□□□ 1.3
UPF3A-209ENST00000492270 QSOX2Q6ZRP7 698 aa23.18■■□□□ 1.3
UPF3A-209ENST00000492270 TRMT10CQ7L0Y3 403 aaKnown RBP23.18■■□□□ 1.3
UPF3A-209ENST00000492270 LAS2Q8IYD9 372 aa23.18■■□□□ 1.3
UPF3A-209ENST00000492270 RNF175Q8N4F7 328 aa23.18■■□□□ 1.3
UPF3A-209ENST00000492270 ZNF473Q8WTR7 871 aaKnown RBP23.18■■□□□ 1.3
UPF3A-209ENST00000492270 MS4A8Q9BY19 250 aa23.18■■□□□ 1.3
UPF3A-209ENST00000492270 TXLNGYQ9BZA5 131 aa23.18■■□□□ 1.3
UPF3A-209ENST00000492270 NECTIN3Q9NQS3 549 aa23.18■■□□□ 1.3
UPF3A-209ENST00000492270 XPR1Q9UBH6 696 aa23.18■■□□□ 1.3
UPF3A-209ENST00000492270 VPS4AQ9UN37 437 aa23.18■■□□□ 1.3
UPF3A-209ENST00000492270 ANGPTL3Q9Y5C1 460 aa23.18■■□□□ 1.3
UPF3A-209ENST00000492270 RP1L1Q8IWN7 2480 aaPredicted RBP23.18■■□□□ 1.3
UPF3A-209ENST00000492270 MYBL2P10244 700 aa23.17■■□□□ 1.3
UPF3A-209ENST00000492270 CNTFP26441 200 aa23.17■■□□□ 1.3
UPF3A-209ENST00000492270 HNRNPFP52597 415 aaKnown RBP23.17■■□□□ 1.3
UPF3A-209ENST00000492270 ARG2P78540 354 aa23.17■■□□□ 1.3
UPF3A-209ENST00000492270 ACTN3Q08043 901 aaPredicted RBP23.17■■□□□ 1.3
UPF3A-209ENST00000492270 PCDH1Q08174 1060 aa23.17■■□□□ 1.3
UPF3A-209ENST00000492270 ZNF169Q14929 603 aaPredicted RBP23.17■■□□□ 1.3
UPF3A-209ENST00000492270 PCBP2Q15366 365 aaKnown RBP eCLIP23.17■■□□□ 1.3
UPF3A-209ENST00000492270 FCRLBQ6BAA4 426 aa23.17■■□□□ 1.3
UPF3A-209ENST00000492270 GRHL2Q6ISB3 625 aa23.17■■□□□ 1.3
UPF3A-209ENST00000492270 MED27Q6P2C8 311 aa23.17■■□□□ 1.3
UPF3A-209ENST00000492270 GOLGA7Q7Z5G4 137 aa23.17■■□□□ 1.3
UPF3A-209ENST00000492270 GALNT11Q8NCW6 608 aa23.17■■□□□ 1.3
UPF3A-209ENST00000492270 TMEM52Q8NDY8 209 aa23.17■■□□□ 1.3
UPF3A-209ENST00000492270 OR7G3Q8NG95 312 aa23.17■■□□□ 1.3
UPF3A-209ENST00000492270 SCYL1Q96KG9 808 aa23.17■■□□□ 1.3
UPF3A-209ENST00000492270 LPAR4Q99677 370 aa23.17■■□□□ 1.3
UPF3A-209ENST00000492270 EPB41L4BQ9H329 900 aa23.17■■□□□ 1.3
UPF3A-209ENST00000492270 PRM3Q9NNZ6 103 aa23.17■■□□□ 1.3
UPF3A-209ENST00000492270 ESPL1Q14674 2120 aa23.17■■□□□ 1.3
UPF3A-209ENST00000492270 IGKV3D-11A0A0A0MRZ8 115 aa23.16■■□□□ 1.3
UPF3A-209ENST00000492270 A8MUI8 341 aa23.16■■□□□ 1.3
UPF3A-209ENST00000492270 TCP11X1B4DZS4 312 aa23.16■■□□□ 1.3
UPF3A-209ENST00000492270 B3GALT2O43825 422 aa23.16■■□□□ 1.3
UPF3A-209ENST00000492270 RAB38P57729 211 aa23.16■■□□□ 1.3
UPF3A-209ENST00000492270 AP2B1P63010 937 aa23.16■■□□□ 1.3
UPF3A-209ENST00000492270 GTF2H2Q13888 395 aa23.16■■□□□ 1.3
UPF3A-209ENST00000492270 GTF2H2CQ6P1K8 395 aa23.16■■□□□ 1.3
UPF3A-209ENST00000492270 UBE3DQ7Z6J8 389 aa23.16■■□□□ 1.3
UPF3A-209ENST00000492270 MYLK4Q86YV6 388 aaPredicted RBP23.16■■□□□ 1.3
UPF3A-209ENST00000492270 CYP4X1Q8N118 509 aa23.16■■□□□ 1.3
UPF3A-209ENST00000492270 PTGR2Q8N8N7 351 aaPredicted RBP23.16■■□□□ 1.3
UPF3A-209ENST00000492270 FAM47BQ8NA70 645 aa23.16■■□□□ 1.3
UPF3A-209ENST00000492270 PHF21BQ96EK2 531 aa23.16■■□□□ 1.3
UPF3A-209ENST00000492270 CSF3RQ99062 836 aa23.16■■□□□ 1.3
UPF3A-209ENST00000492270 NPLQ9BXD5 320 aaPredicted RBP23.16■■□□□ 1.3
UPF3A-209ENST00000492270 L2HGDHQ9H9P8 463 aa23.16■■□□□ 1.3
UPF3A-209ENST00000492270 COPS7BQ9H9Q2 264 aaPredicted RBP23.16■■□□□ 1.3
UPF3A-209ENST00000492270 PRDM9Q9NQV7 894 aa23.16■■□□□ 1.3
UPF3A-209ENST00000492270 PRDM7Q9NQW5 492 aa23.16■■□□□ 1.3
UPF3A-209ENST00000492270 COL12A1Q99715 3063 aa23.15■■□□□ 1.3
UPF3A-209ENST00000492270 SETXQ7Z333 2677 aaKnown RBP23.15■■□□□ 1.3
UPF3A-209ENST00000492270 TCRBV16S1A1N1A0A5B0 115 aa23.15■■□□□ 1.3
UPF3A-209ENST00000492270 RTCAO00442 366 aaKnown RBP23.15■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms