RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 PSD3Q9NYI0 1048 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 NOL12Q9UGY1 213 aaKnown RBP eCLIP5.41□□□□□ -1.54
CUX1-208ENST00000485792 ZNF225Q9UK10 706 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 TLK1Q9UKI8 766 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 NXT1Q9UKK6 140 aaKnown RBP5.41□□□□□ -1.54
CUX1-208ENST00000485792 PCDHGB7Q9Y5F8 929 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 HS3ST3B1Q9Y662 390 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 KCNE2Q9Y6J6 123 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 V9GYY5 206 aaPredicted RBP5.41□□□□□ -1.54
CUX1-208ENST00000485792 SETXQ7Z333 2677 aaKnown RBP5.41□□□□□ -1.54
CUX1-208ENST00000485792 A0A087WUV0 522 aaPredicted RBP5.4□□□□□ -1.54
CUX1-208ENST00000485792 A0A096LPK6 155 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 A0A1W2PS29 197 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 LRIT2A6NDA9 550 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 C9J4A7 227 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 AGPSO00116 658 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 UBXN8O00124 270 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 E2F3O00716 465 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 GALR3O60755 368 aaPredicted RBP5.4□□□□□ -1.54
CUX1-208ENST00000485792 CLEC3AO75596 197 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 STK16O75716 305 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 SCELO95171 688 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 ETHE1O95571 254 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 ACSL3O95573 720 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 GUCA1CO95843 209 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 SYF2O95926 243 aaKnown RBP5.4□□□□□ -1.54
CUX1-208ENST00000485792 IGHEP01854 428 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 RHOXF2BP0C7M4 288 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 TFEBP19484 476 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 IL10P22301 178 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 HNRNPH1P31943 449 aaKnown RBP5.4□□□□□ -1.54
CUX1-208ENST00000485792 ARRB2P32121 409 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 OR1D4P47884 311 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 ARFIP1P53367 373 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 VSNL1P62760 191 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 KLC1Q07866 573 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 CDC16Q13042 620 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 KCNAB2Q13303 367 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 ATP1A4Q13733 1029 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 CSHL1Q14406 222 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 SLC29A2Q14542 456 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 SETDB1Q15047 1291 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 FAM83EQ2M2I3 478 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 DEFB109BQ30KR1 87 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 DCAF10Q5QP82 559 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 NIPAL1Q6NVV3 410 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 H3F3CQ6NXT2 135 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 LRRC70Q7Z2Q7 622 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 UBE3DQ7Z6J8 389 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 MRGPREQ86SM8 312 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 ASPGQ86U10 573 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 LSRQ86X29 649 aaPredicted RBP5.4□□□□□ -1.54
CUX1-208ENST00000485792 HPS6Q86YV9 775 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 WFDC8Q8IUA0 241 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 CTAGE3PQ8IX95 158 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP5.4□□□□□ -1.54
CUX1-208ENST00000485792 ARMC10Q8N2F6 343 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 L3MBTL4Q8NA19 623 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 TTC29Q8NA56 475 aaPredicted RBP5.4□□□□□ -1.54
CUX1-208ENST00000485792 Q8NA96 180 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 TRPV3Q8NET8 790 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 OR11G2Q8NGC1 345 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 UTP15Q8TED0 518 aaKnown RBP5.4□□□□□ -1.54
CUX1-208ENST00000485792 SLC13A3Q8WWT9 602 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 ZBTB9Q96C00 473 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 MRRFQ96E11 262 aaKnown RBP5.4□□□□□ -1.54
CUX1-208ENST00000485792 OR1F2PQ96R84 312 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 BARD1Q99728 777 aaKnown RBP5.4□□□□□ -1.54
CUX1-208ENST00000485792 NPAS2Q99743 824 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 WDR77Q9BQA1 342 aaPredicted RBP5.4□□□□□ -1.54
CUX1-208ENST00000485792 RHOXF2Q9BQY4 288 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 NTMT1Q9BV86 223 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 NUDT9Q9BW91 350 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 ADAM19Q9H013 955 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 DRC3Q9H069 523 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 ING2Q9H160 280 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 KLHL31Q9H511 634 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 ALG9Q9H6U8 611 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 CNOT10Q9H9A5 744 aaKnown RBP5.4□□□□□ -1.54
CUX1-208ENST00000485792 ZBTB26Q9HCK0 441 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 MKKSQ9NPJ1 570 aaPredicted RBP5.4□□□□□ -1.54
CUX1-208ENST00000485792 TXLNGQ9NUQ3 528 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 ABCF3Q9NUQ8 709 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 C14orf105Q9NVL8 296 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 P4HTMQ9NXG6 502 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 NUDT4Q9NZJ9 180 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 C5AR2Q9P296 337 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 IFT80Q9P2H3 777 aaPredicted RBP5.4□□□□□ -1.54
CUX1-208ENST00000485792 TXNDC16Q9P2K2 825 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 ZNF282Q9UDV7 671 aaPredicted RBP5.4□□□□□ -1.54
CUX1-208ENST00000485792 CDC14AQ9UNH5 594 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 PPIEQ9UNP9 301 aaKnown RBP5.4□□□□□ -1.54
CUX1-208ENST00000485792 PADI2Q9Y2J8 665 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 MAU2Q9Y6X3 613 aa5.4□□□□□ -1.54
CUX1-208ENST00000485792 DOPEY1Q5JWR5 2465 aa5.4□□□□□ -1.55
CUX1-208ENST00000485792 FLNBO75369 2602 aaKnown RBP5.4□□□□□ -1.55
CUX1-208ENST00000485792 IGKV3D-11A0A0A0MRZ8 115 aa5.39□□□□□ -1.55
CUX1-208ENST00000485792 A0A0A6YYC8 382 aaPredicted RBP5.39□□□□□ -1.55
CUX1-208ENST00000485792 ZNF860A6NHJ4 632 aa5.39□□□□□ -1.55
CUX1-208ENST00000485792 NCF1BA6NI72 391 aaPredicted RBP5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms