RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 TCEAL6Q6IPX3 200 aa4.57□□□□□ -1.68
UPF3B-203ENST00000478840 TMEM207Q6UWW9 146 aa4.57□□□□□ -1.68
UPF3B-203ENST00000478840 RBMS3Q6XE24 437 aaKnown RBP4.57□□□□□ -1.68
UPF3B-203ENST00000478840 TEX26Q8N6G2 289 aa4.57□□□□□ -1.68
UPF3B-203ENST00000478840 RNF148Q8N7C7 305 aa4.57□□□□□ -1.68
UPF3B-203ENST00000478840 LEMD2Q8NC56 503 aa4.57□□□□□ -1.68
UPF3B-203ENST00000478840 OR4C3Q8NH37 302 aa4.57□□□□□ -1.68
UPF3B-203ENST00000478840 LMO3Q8TAP4 145 aa4.57□□□□□ -1.68
UPF3B-203ENST00000478840 GANCQ8TET4 914 aa4.57□□□□□ -1.68
UPF3B-203ENST00000478840 U2AF1L4Q8WU68 220 aaKnown RBP4.57□□□□□ -1.68
UPF3B-203ENST00000478840 DYRK2Q92630 601 aa4.57□□□□□ -1.68
UPF3B-203ENST00000478840 GLYATL1Q969I3 302 aa4.57□□□□□ -1.68
UPF3B-203ENST00000478840 TMEM143Q96AN5 459 aa4.57□□□□□ -1.68
UPF3B-203ENST00000478840 S1PR3Q99500 378 aa4.57□□□□□ -1.68
UPF3B-203ENST00000478840 ASCL2Q99929 193 aa4.57□□□□□ -1.68
UPF3B-203ENST00000478840 GANQ9H2C0 597 aa4.57□□□□□ -1.68
UPF3B-203ENST00000478840 BICC1Q9H694 974 aaKnown RBP4.57□□□□□ -1.68
UPF3B-203ENST00000478840 ECT2Q9H8V3 914 aa4.57□□□□□ -1.68
UPF3B-203ENST00000478840 MARCH7Q9H992 704 aa4.57□□□□□ -1.68
UPF3B-203ENST00000478840 SIX2Q9NPC8 291 aa4.57□□□□□ -1.68
UPF3B-203ENST00000478840 HOMER3Q9NSC5 361 aa4.57□□□□□ -1.68
UPF3B-203ENST00000478840 ZFP57Q9NU63 452 aa4.57□□□□□ -1.68
UPF3B-203ENST00000478840 TMOD3Q9NYL9 352 aa4.57□□□□□ -1.68
UPF3B-203ENST00000478840 CNOT2Q9NZN8 540 aaKnown RBP4.57□□□□□ -1.68
UPF3B-203ENST00000478840 ZKSCAN7Q9P0L1 754 aaPredicted RBP4.57□□□□□ -1.68
UPF3B-203ENST00000478840 FAM153AQ9UHL3 310 aa4.57□□□□□ -1.68
UPF3B-203ENST00000478840 AP1M2Q9Y6Q5 423 aa4.57□□□□□ -1.68
UPF3B-203ENST00000478840 MSGN1A6NI15 193 aa4.56□□□□□ -1.68
UPF3B-203ENST00000478840 NKX6-3A6NJ46 265 aa4.56□□□□□ -1.68
UPF3B-203ENST00000478840 INSIG1O15503 277 aa4.56□□□□□ -1.68
UPF3B-203ENST00000478840 EXTL3O43909 919 aa4.56□□□□□ -1.68
UPF3B-203ENST00000478840 CYTIPO60759 359 aa4.56□□□□□ -1.68
UPF3B-203ENST00000478840 SAP30O75446 220 aa4.56□□□□□ -1.68
UPF3B-203ENST00000478840 UMODP07911 640 aa4.56□□□□□ -1.68
UPF3B-203ENST00000478840 FGF3P11487 239 aaPredicted RBP4.56□□□□□ -1.68
UPF3B-203ENST00000478840 B4GALT1P15291 398 aa4.56□□□□□ -1.68
UPF3B-203ENST00000478840 AMD1P17707 334 aa4.56□□□□□ -1.68
UPF3B-203ENST00000478840 GJB2P29033 226 aa4.56□□□□□ -1.68
UPF3B-203ENST00000478840 STIP1P31948 543 aaKnown RBP4.56□□□□□ -1.68
UPF3B-203ENST00000478840 FOXG1P55316 489 aaPredicted RBP4.56□□□□□ -1.68
UPF3B-203ENST00000478840 SLC26A5P58743 744 aa4.56□□□□□ -1.68
UPF3B-203ENST00000478840 DCDC1P59894 354 aa4.56□□□□□ -1.68
UPF3B-203ENST00000478840 CDR2Q01850 454 aa4.56□□□□□ -1.68
UPF3B-203ENST00000478840 MEF2DQ14814 521 aa4.56□□□□□ -1.68
UPF3B-203ENST00000478840 KARSQ15046 597 aaKnown RBP4.56□□□□□ -1.68
UPF3B-203ENST00000478840 ZNF74Q16587 644 aa4.56□□□□□ -1.68
UPF3B-203ENST00000478840 IZUMO4Q1ZYL8 232 aa4.56□□□□□ -1.68
UPF3B-203ENST00000478840 HSP90AA5PQ58FG0 334 aa4.56□□□□□ -1.68
UPF3B-203ENST00000478840 FGD3Q5JSP0 725 aa4.56□□□□□ -1.68
UPF3B-203ENST00000478840 NKAIN2Q5VXU1 208 aa4.56□□□□□ -1.68
UPF3B-203ENST00000478840 ZNF324BQ6AW86 544 aaPredicted RBP4.56□□□□□ -1.68
UPF3B-203ENST00000478840 RAET1GQ6H3X3 334 aa4.56□□□□□ -1.68
UPF3B-203ENST00000478840 SLC25A47Q6Q0C1 308 aa4.56□□□□□ -1.68
UPF3B-203ENST00000478840 CEACAM20Q6UY09 585 aa4.56□□□□□ -1.68
UPF3B-203ENST00000478840 TRMT11Q7Z4G4 463 aaKnown RBP4.56□□□□□ -1.68
UPF3B-203ENST00000478840 TRPT1Q86TN4 253 aaKnown RBP4.56□□□□□ -1.68
UPF3B-203ENST00000478840 CCDC185Q8N715 623 aa4.56□□□□□ -1.68
UPF3B-203ENST00000478840 FAM71CQ8NEG0 241 aa4.56□□□□□ -1.68
UPF3B-203ENST00000478840 OR56B1Q8NGI3 324 aa4.56□□□□□ -1.68
UPF3B-203ENST00000478840 TM9SF4Q92544 642 aa4.56□□□□□ -1.68
UPF3B-203ENST00000478840 CASP10Q92851 521 aa4.56□□□□□ -1.68
UPF3B-203ENST00000478840 BPIFA2Q96DR5 249 aa4.56□□□□□ -1.68
UPF3B-203ENST00000478840 SENP5Q96HI0 755 aaPredicted RBP4.56□□□□□ -1.68
UPF3B-203ENST00000478840 MARK4Q96L34 752 aa4.56□□□□□ -1.68
UPF3B-203ENST00000478840 ZNF354BQ96LW1 612 aa4.56□□□□□ -1.68
UPF3B-203ENST00000478840 TAAR6Q96RI8 345 aa4.56□□□□□ -1.68
UPF3B-203ENST00000478840 COQ7Q99807 217 aa4.56□□□□□ -1.68
UPF3B-203ENST00000478840 CCSER1Q9C0I3 900 aa4.56□□□□□ -1.68
UPF3B-203ENST00000478840 RAB17Q9H0T7 212 aa4.56□□□□□ -1.68
UPF3B-203ENST00000478840 SIRPDQ9H106 197 aa4.56□□□□□ -1.68
UPF3B-203ENST00000478840 DCLRE1BQ9H816 532 aa4.56□□□□□ -1.68
UPF3B-203ENST00000478840 FAM212BQ9NTI7 297 aaPredicted RBP4.56□□□□□ -1.68
UPF3B-203ENST00000478840 NARFQ9UHQ1 456 aa4.56□□□□□ -1.68
UPF3B-203ENST00000478840 ETV7Q9Y603 341 aa4.56□□□□□ -1.68
UPF3B-203ENST00000478840 NCAPD2Q15021 1401 aa4.55□□□□□ -1.68
UPF3B-203ENST00000478840 GIMAP1-GIMAP5A0A087WTJ2 511 aa4.55□□□□□ -1.68
UPF3B-203ENST00000478840 A0A0U1RRA0 63 aa4.55□□□□□ -1.68
UPF3B-203ENST00000478840 SRRM4A7MD48 611 aaKnown RBP4.55□□□□□ -1.68
UPF3B-203ENST00000478840 ACOT8O14734 319 aa4.55□□□□□ -1.68
UPF3B-203ENST00000478840 CHEK1O14757 476 aa4.55□□□□□ -1.68
UPF3B-203ENST00000478840 P2RX6O15547 441 aa4.55□□□□□ -1.68
UPF3B-203ENST00000478840 CLPTM1O96005 669 aa4.55□□□□□ -1.68
UPF3B-203ENST00000478840 NGFP01138 241 aa4.55□□□□□ -1.68
UPF3B-203ENST00000478840 ATP1A1P05023 1023 aaKnown RBP4.55□□□□□ -1.68
UPF3B-203ENST00000478840 GSTA2P09210 222 aa4.55□□□□□ -1.68
UPF3B-203ENST00000478840 FUT1P19526 365 aa4.55□□□□□ -1.68
UPF3B-203ENST00000478840 ACKR3P25106 362 aa4.55□□□□□ -1.68
UPF3B-203ENST00000478840 AKT2P31751 481 aa4.55□□□□□ -1.68
UPF3B-203ENST00000478840 SLC1A3P43003 542 aa4.55□□□□□ -1.68
UPF3B-203ENST00000478840 OR3A2P47893 321 aa4.55□□□□□ -1.68
UPF3B-203ENST00000478840 KCNK10P57789 538 aa4.55□□□□□ -1.68
UPF3B-203ENST00000478840 PRKCEQ02156 737 aa4.55□□□□□ -1.68
UPF3B-203ENST00000478840 SP3Q02447 781 aa4.55□□□□□ -1.68
UPF3B-203ENST00000478840 POU3F1Q03052 451 aaPredicted RBP4.55□□□□□ -1.68
UPF3B-203ENST00000478840 SPP2Q13103 211 aa4.55□□□□□ -1.68
UPF3B-203ENST00000478840 SCGB2A2Q13296 93 aa4.55□□□□□ -1.68
UPF3B-203ENST00000478840 KRT31Q15323 416 aa4.55□□□□□ -1.68
UPF3B-203ENST00000478840 CEBPEQ15744 281 aa4.55□□□□□ -1.68
UPF3B-203ENST00000478840 DUSP5Q16690 384 aa4.55□□□□□ -1.68
UPF3B-203ENST00000478840 KIAA1644Q3SXP7 199 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms