RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 NUDT7P0C024 238 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 RPS3AP61247 264 aaKnown RBP11.18□□□□□ -0.62
NPHP4-204ENST00000460696 COLEC12Q5KU26 742 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 ZNF730Q6ZMV8 503 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 PIWIL3Q7Z3Z3 882 aaKnown RBP11.18□□□□□ -0.62
NPHP4-204ENST00000460696 MRPL43Q8N983 215 aaKnown RBP11.18□□□□□ -0.62
NPHP4-204ENST00000460696 PHOSPHO2Q8TCD6 241 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 LCN9Q8WX39 176 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 SMPDL3AQ92484 453 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 TAMM41Q96BW9 452 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 ART5Q96L15 291 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 ALPK1Q96QP1 1244 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 DOHHQ9BU89 302 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 CD207Q9UJ71 328 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 FEZF1A0PJY2 475 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 TFECO14948 347 aaPredicted RBP11.18□□□□□ -0.62
NPHP4-204ENST00000460696 ZNF12P17014 697 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 PFKLP17858 780 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 PSMA1P25786 263 aaKnown RBP11.18□□□□□ -0.62
NPHP4-204ENST00000460696 HTR1BP28222 390 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 TMBIM6P55061 237 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 GSTM4Q03013 218 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 TUBA3CQ13748 450 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 SPRED1Q7Z699 444 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 FAR1Q8WVX9 515 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 IPCEF1Q8WWN9 437 aaPredicted RBP11.18□□□□□ -0.62
NPHP4-204ENST00000460696 SLC38A2Q96QD8 506 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 KCNS3Q9BQ31 491 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 OSBPL10Q9BXB5 764 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 LTB4R2Q9NPC1 389 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 SSR3Q9UNL2 185 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 ABCG2Q9UNQ0 655 aa11.18□□□□□ -0.62
NPHP4-204ENST00000460696 SCAMP2O15127 329 aaKnown RBP11.17□□□□□ -0.62
NPHP4-204ENST00000460696 AP1G1O43747 822 aa11.17□□□□□ -0.62
NPHP4-204ENST00000460696 TMCC2O75069 709 aa11.17□□□□□ -0.62
NPHP4-204ENST00000460696 TIMP2P16035 220 aa11.17□□□□□ -0.62
NPHP4-204ENST00000460696 ARL4DP49703 201 aa11.17□□□□□ -0.62
NPHP4-204ENST00000460696 RGS8P57771 180 aaPredicted RBP11.17□□□□□ -0.62
NPHP4-204ENST00000460696 GNA13Q14344 377 aa11.17□□□□□ -0.62
NPHP4-204ENST00000460696 LRRC32Q14392 662 aa11.17□□□□□ -0.62
NPHP4-204ENST00000460696 CCSMST1Q4G0I0 132 aa11.17□□□□□ -0.62
NPHP4-204ENST00000460696 IQCCQ4KMZ1 466 aa11.17□□□□□ -0.62
NPHP4-204ENST00000460696 ANKRD34AQ69YU3 496 aa11.17□□□□□ -0.62
NPHP4-204ENST00000460696 LIPIQ6XZB0 460 aa11.17□□□□□ -0.62
NPHP4-204ENST00000460696 PTRH1Q86Y79 214 aaKnown RBP11.17□□□□□ -0.62
NPHP4-204ENST00000460696 DCUN1D3Q8IWE4 304 aa11.17□□□□□ -0.62
NPHP4-204ENST00000460696 RASGEF1AQ8N9B8 481 aa11.17□□□□□ -0.62
NPHP4-204ENST00000460696 CLIP3Q96DZ5 547 aa11.17□□□□□ -0.62
NPHP4-204ENST00000460696 CNPPD1Q9BV87 410 aa11.17□□□□□ -0.62
NPHP4-204ENST00000460696 IKZF5Q9H5V7 419 aa11.17□□□□□ -0.62
NPHP4-204ENST00000460696 KLHL1Q9NR64 748 aa11.17□□□□□ -0.62
NPHP4-204ENST00000460696 POFUT2Q9Y2G5 429 aa11.17□□□□□ -0.62
NPHP4-204ENST00000460696 GRXCR2A6NFK2 248 aa11.17□□□□□ -0.62
NPHP4-204ENST00000460696 GABRR3A8MPY1 467 aa11.17□□□□□ -0.62
NPHP4-204ENST00000460696 EIF3FO00303 357 aaPredicted RBP11.17□□□□□ -0.62
NPHP4-204ENST00000460696 ZNF8P17098 575 aaPredicted RBP11.17□□□□□ -0.62
NPHP4-204ENST00000460696 CCT3P49368 545 aaKnown RBP11.17□□□□□ -0.62
NPHP4-204ENST00000460696 LASP1Q14847 261 aaKnown RBP11.17□□□□□ -0.62
NPHP4-204ENST00000460696 SLC9A5Q14940 896 aa11.17□□□□□ -0.62
NPHP4-204ENST00000460696 KLHL12Q53G59 568 aa11.17□□□□□ -0.62
NPHP4-204ENST00000460696 ZNF551Q7Z340 670 aaPredicted RBP11.17□□□□□ -0.62
NPHP4-204ENST00000460696 C19orf18Q8NEA5 215 aa11.17□□□□□ -0.62
NPHP4-204ENST00000460696 SORBS1Q9BX66 1292 aaKnown RBP11.17□□□□□ -0.62
NPHP4-204ENST00000460696 KRCC1Q9NPI7 259 aaPredicted RBP11.17□□□□□ -0.62
NPHP4-204ENST00000460696 RASGRP1O95267 797 aa11.17□□□□□ -0.62
NPHP4-204ENST00000460696 HPGDP15428 266 aa11.17□□□□□ -0.62
NPHP4-204ENST00000460696 PTNP21246 168 aa11.17□□□□□ -0.62
NPHP4-204ENST00000460696 CD9P21926 228 aa11.17□□□□□ -0.62
NPHP4-204ENST00000460696 CLCN2P51788 898 aa11.17□□□□□ -0.62
NPHP4-204ENST00000460696 RGS1Q08116 209 aa11.17□□□□□ -0.62
NPHP4-204ENST00000460696 CDK5R2Q13319 367 aa11.17□□□□□ -0.62
NPHP4-204ENST00000460696 IL18R1Q13478 541 aa11.17□□□□□ -0.62
NPHP4-204ENST00000460696 ZNF630Q2M218 657 aaPredicted RBP11.17□□□□□ -0.62
NPHP4-204ENST00000460696 EXOC3L2Q2M3D2 409 aa11.17□□□□□ -0.62
NPHP4-204ENST00000460696 PLEKHM3Q6ZWE6 761 aa11.17□□□□□ -0.62
NPHP4-204ENST00000460696 ERN2Q76MJ5 926 aaKnown RBP11.17□□□□□ -0.62
NPHP4-204ENST00000460696 SPARTQ8N0X7 666 aa11.17□□□□□ -0.62
NPHP4-204ENST00000460696 UBASH3BQ8TF42 649 aa11.17□□□□□ -0.62
NPHP4-204ENST00000460696 HERVK_113Q902F9 699 aa11.17□□□□□ -0.62
NPHP4-204ENST00000460696 CIDECQ96AQ7 238 aaPredicted RBP11.17□□□□□ -0.62
NPHP4-204ENST00000460696 RGMAQ96B86 450 aa11.17□□□□□ -0.62
NPHP4-204ENST00000460696 CARS2Q9HA77 564 aaKnown RBP11.17□□□□□ -0.62
NPHP4-204ENST00000460696 MRPS30Q9NP92 439 aaKnown RBP11.17□□□□□ -0.62
NPHP4-204ENST00000460696 UTS2RQ9UKP6 389 aa11.17□□□□□ -0.62
NPHP4-204ENST00000460696 HS3ST2Q9Y278 367 aa11.17□□□□□ -0.62
NPHP4-204ENST00000460696 GSTK1Q9Y2Q3 226 aa11.17□□□□□ -0.62
NPHP4-204ENST00000460696 NINQ8N4C6 2090 aa11.17□□□□□ -0.62
NPHP4-204ENST00000460696 LINC01565O15544 149 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 RPLP0P05388 317 aaKnown RBP11.16□□□□□ -0.62
NPHP4-204ENST00000460696 CTSEP14091 401 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 FEN1P39748 380 aaKnown RBP11.16□□□□□ -0.62
NPHP4-204ENST00000460696 NCS1P62166 190 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 ELAVL3Q14576 367 aaKnown RBP11.16□□□□□ -0.62
NPHP4-204ENST00000460696 SMN1Q16637 294 aaKnown RBP11.16□□□□□ -0.62
NPHP4-204ENST00000460696 CRB2Q5IJ48 1285 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 CLEC12AQ5QGZ9 265 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 GPR149Q86SP6 731 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 SLC38A4Q969I6 547 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 TMEM203Q969S6 136 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 OTUB2Q96DC9 234 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms